Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_F15
(925 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-... 48 4e-05
sp|Q9C438|ATG11_PICPA Autophagy-related protein 11 (Glucose... 39 0.027
sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial pr... 37 0.10
sp|P34231|YKS7_YEAST Hypothetical 81.0 kDa protein in PXA2-... 36 0.17
sp|P36170|YK82_YEAST Hypothetical 122.2 kDa protein in SIR1... 36 0.17
sp|P45554|DNAK_STAAU Chaperone protein dnaK (Heat shock pro... 35 0.23
sp|P64408|DNAK_STAAW Chaperone protein dnaK (Heat shock pro... 35 0.23
sp|Q06895|VP4_ROTHY Outer capsid protein VP4 (Hemagglutinin... 35 0.23
sp|Q06894|VP4_ROTD9 Outer capsid protein VP4 (Hemagglutinin... 35 0.23
sp|Q81Q29|DDL_BACAN D-alanine--D-alanine ligase (D-alanylal... 35 0.39
>sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic region
Length = 551
Score = 47.8 bits (112), Expect = 4e-05
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 8/229 (3%)
Frame = +2
Query: 23 IPSTILKITDLVEKSKSISSTILPDLGKTSPDNKISTLIKKEISEPTKKVNIIPSTILKI 202
+ S+ ++++ S S T SP + ST+I S PT V ST+
Sbjct: 103 LSSSSMQVSSSSTSSSSSEVTSSSSSSSISPSSSSSTIISSSSSLPTFTVASTSSTVASS 162
Query: 203 T-----DLVEKSKSISSTILPDSGKTSLGNKISTLIN-KEISEPTKKVNIIPSTILKITD 364
T LV + S + T +S + + + IST ++ + P+ + PS+ ++T
Sbjct: 163 TLSTSSSLVISTSSSTFTFSSESSSSLISSSISTSVSTSSVYVPSSSTSSPPSSSSELTS 222
Query: 365 LVEKSKSISSTIFEDLKMSSSDNKIIPLITKTIPNFSITDKPSQTIITVSNQNNDSKQNY 544
S S SST+F SS + + + + S + T+ T S+ + S +Y
Sbjct: 223 SSYSSSSSSSTLFSYSSSFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSIYSSSSY 282
Query: 545 K--KNEPTKNPLFNAHLTPKFDTIKIATNEINFKNSTLMFVSDASIKTN 685
+ + NP + T +I A+ N + + +I +N
Sbjct: 283 PSFSSSSSSNPTSSITSTSASSSITPASEYSNLAKTITSIIEGQTILSN 331
>sp|Q9C438|ATG11_PICPA Autophagy-related protein 11 (Glucose-induced selective autophagy
protein 9) (Pexophagy zeocin-resistant mutant protein 6)
Length = 1313
Score = 38.5 bits (88), Expect = 0.027
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Frame = +2
Query: 32 TILKITDLVEK--SKSISSTILPDLGKTSPDNKISTLIKKEISEPTKKVNIIPSTILKIT 205
T+ ++T+LV + S IL +L TS N ST + +E KK+N++ S
Sbjct: 333 TLNRLTELVNQVVKDSKELPILDELLTTSGGN--STTLS---AESVKKINVLVSVF---- 383
Query: 206 DLVEKSKSISSTILPDSGKTSLGNKI-----------STLINKEISEPTKKVNIIPSTIL 352
++ SSTI+P T L NK+ L +S+ K+ + +IL
Sbjct: 384 ------ETHSSTIIPQI--TELSNKLYDEKVEALNLKQDLQRTLLSDTIHKIVGVQLSIL 435
Query: 353 KITDLV--EKSKSISSTIFEDLKMSSSDNKIIPLI 451
K T+L+ + SK+IS+ F +LKMS K +PL+
Sbjct: 436 KATNLINNDLSKNISNLDFNELKMSIV--KDLPLV 468
>sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial precursor
Length = 971
Score = 36.6 bits (83), Expect = 0.10
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 101 GKTSPDNKISTLIKKEISEPTKKVNIIPSTILKITDLVEKSKSISSTIL-----PDSGKT 265
G TSP+N+ ++ KK + E + + I++ + KSI IL P GKT
Sbjct: 460 GLTSPENRRLSVAKKALDEGHYGMKDVKERIMEFIAVNLLRKSIGGKILCFHGPPGVGKT 519
Query: 266 SLGNKISTLINKE 304
S+ I+T +N+E
Sbjct: 520 SIAKSIATALNRE 532
>sp|P34231|YKS7_YEAST Hypothetical 81.0 kDa protein in PXA2-MTR2 intergenic region
Length = 750
Score = 35.8 bits (81), Expect = 0.17
Identities = 29/149 (19%), Positives = 63/149 (42%)
Frame = +2
Query: 221 SKSISSTILPDSGKTSLGNKISTLINKEISEPTKKVNIIPSTILKITDLVEKSKSISSTI 400
S+ +S+++ S +S + ST + ++ + + +L + +L K+ +
Sbjct: 163 SRLVSASL---SSASSNSSSDSTTLVLDLLKDSDNPQNSTDALLTLNNLTMSEKAQLLPV 219
Query: 401 FEDLKMSSSDNKIIPLITKTIPNFSITDKPSQTIITVSNQNNDSKQNYKKNEPTKNPLFN 580
F S++ + + T+ N +I+ +QT++T + + T PL
Sbjct: 220 FRLFAFSTNQTATMTALA-TLMNTTISSSLAQTLLTQLQNTISNGGSLNNTFSTLQPLVP 278
Query: 581 AHLTPKFDTIKIATNEINFKNSTLMFVSD 667
P FD +++ N+ N TL +SD
Sbjct: 279 QASAPAFDAVELLLNQTTSTNQTLSTLSD 307
>sp|P36170|YK82_YEAST Hypothetical 122.2 kDa protein in SIR1 3'region precursor
Length = 1169
Score = 35.8 bits (81), Expect = 0.17
Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 18/194 (9%)
Frame = +2
Query: 65 SKSISSTILPDLGKTSPDNKISTLIKKEISEPTKKVNIIPSTILKITDLVEKSKSISST- 241
S +++S + D T+ +S+ + + + PT V ST + KS SS
Sbjct: 621 SNTMTSLVQTD---TTVSFSLSSTVSEHTNAPTSSVESNASTFISSNKGSVKSYVTSSIH 677
Query: 242 ----ILPDSGKTSLGNKISTLINKEISEPTKKVNIIPSTI---LKITDLVEKSKSISS-- 394
+ P + + + +ST I E SE + V I+PSTI K + + K SISS
Sbjct: 678 SITPMYPSNQTVTSSSVVSTPITSESSESSASVTILPSTITSEFKPSTMKTKVVSISSSP 737
Query: 395 --------TIFEDLKMSSSDNKIIPLITKTIPNFSITDKPSQTIITVSNQNNDSKQNYKK 550
T +D + SS + + + + ++P+ ++ + N + ++
Sbjct: 738 TNLITSYDTTSKDSTVGSSTSSVSLISSISLPSSYSASSEQIFHSSIVSSNGQALTSFSS 797
Query: 551 NEPTKNPLFNAHLT 592
+ + + +H T
Sbjct: 798 TKVSSSESSESHRT 811
>sp|P45554|DNAK_STAAU Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 610
Score = 35.4 bits (80), Expect = 0.23
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 23/183 (12%)
Frame = +2
Query: 11 KVNIIPSTILKITD-LVEKSKSISSTILPDLGKTSPD-------------NKISTLIKKE 148
+VN+ S +++D L+ ++ + + D G T+ D + +KKE
Sbjct: 267 EVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKE 326
Query: 149 IS-EPTKKVNIIPSTILKITDLVEK---SKSISSTILPDSGKTSLG-----NKISTLINK 301
I EP K VN P ++ + ++ + + +L D SLG +++TLI +
Sbjct: 327 IGKEPNKGVN--PDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIER 384
Query: 302 EISEPTKKVNIIPSTILKITDLVEKSKSISSTIFEDLKMSSSDNKIIPLITKTIPNFSIT 481
+ PT K I + V+ S+ + + + ++DN KT+ F +T
Sbjct: 385 NTTIPTSKSQIYSTA-------VDNQPSVDVHVLQGERPMAADN-------KTLGRFQLT 430
Query: 482 DKP 490
D P
Sbjct: 431 DIP 433
>sp|P64408|DNAK_STAAW Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
sp|Q6G8Y7|DNAK_STAAS Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
sp|Q6GGC0|DNAK_STAAR Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
sp|P99110|DNAK_STAAN Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
sp|P64407|DNAK_STAAM Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
sp|Q5HFI0|DNAK_STAAC Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 610
Score = 35.4 bits (80), Expect = 0.23
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 23/183 (12%)
Frame = +2
Query: 11 KVNIIPSTILKITD-LVEKSKSISSTILPDLGKTSPD-------------NKISTLIKKE 148
+VN+ S +++D L+ ++ + + D G T+ D + +KKE
Sbjct: 267 EVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKE 326
Query: 149 IS-EPTKKVNIIPSTILKITDLVEK---SKSISSTILPDSGKTSLG-----NKISTLINK 301
I EP K VN P ++ + ++ + + +L D SLG +++TLI +
Sbjct: 327 IGKEPNKGVN--PDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIER 384
Query: 302 EISEPTKKVNIIPSTILKITDLVEKSKSISSTIFEDLKMSSSDNKIIPLITKTIPNFSIT 481
+ PT K I + V+ S+ + + + ++DN KT+ F +T
Sbjct: 385 NTTIPTSKSQIYSTA-------VDNQPSVDVHVLQGERPMAADN-------KTLGRFQLT 430
Query: 482 DKP 490
D P
Sbjct: 431 DIP 433
>sp|Q06895|VP4_ROTHY Outer capsid protein VP4 (Hemagglutinin) (Outer layer protein VP4)
[Contains: Outer capsid protein VP8; Outer capsid
protein VP5]
Length = 776
Score = 35.4 bits (80), Expect = 0.23
Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Frame = +2
Query: 44 ITDLVEKSKSISSTILPDLGKTSPDNKISTLIKKEISEPTKKVN------IIPSTILKIT 205
I ++ +KSI++ ++ ++S + +STL +S+ V+ + S++ T
Sbjct: 534 IKSTIDAAKSIATNVMKKFKRSSLASSVSTL-TDSLSDAASSVSRGSSIRSVGSSVSAWT 592
Query: 206 DLVEKSKSISSTILPDSGKTSLGNKISTLINKEISEPTKKVNIIPSTILKITDLVEKSKS 385
D+ + +SS++ S +TS ++ L KE++ T+ +N + + ++KS
Sbjct: 593 DVSIQITDVSSSVSSISTQTSTISRRLRL--KEMATQTEGMNFDDISAAVLKTKIDKSIQ 650
Query: 386 ISSTIFEDLKMSSSDNKIIP 445
IS T D+ +S+ K IP
Sbjct: 651 ISPTTLPDIVTEASE-KFIP 669
>sp|Q06894|VP4_ROTD9 Outer capsid protein VP4 (Hemagglutinin) (Outer layer protein VP4)
[Contains: Outer capsid protein VP8; Outer capsid
protein VP5]
Length = 776
Score = 35.4 bits (80), Expect = 0.23
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Frame = +2
Query: 44 ITDLVEKSKSISSTILPDLGKTSPDNKISTLIKKEISEPTKKVN------IIPSTILKIT 205
I ++ +KSI++ ++ K+S + +STL +S+ V+ + S++ T
Sbjct: 534 IKSTIDAAKSIATNVMKKFKKSSLASSVSTL-TDSLSDAASSVSRGSSIRSVGSSVSAWT 592
Query: 206 DLVEKSKSISSTILPDSGKTSLGNKISTLINKEISEPTKKVNIIPSTILKITDLVEKSKS 385
D+ + +SS++ S +TS ++ L KE++ T+ +N + + ++KS
Sbjct: 593 DVSTQITDVSSSVSSISTQTSTISRRLRL--KEMATQTEGMNFDDISAAVLKTKIDKSIQ 650
Query: 386 ISSTIFEDLKMSSSDNKIIP 445
IS D+ +S+ K IP
Sbjct: 651 ISPNTLPDIVTEASE-KFIP 669
>sp|Q81Q29|DDL_BACAN D-alanine--D-alanine ligase (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase)
Length = 304
Score = 34.7 bits (78), Expect = 0.39
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Frame = +2
Query: 98 LGKTSPDNKISTLIKKEI--SEPTKKVNIIPSTILKITDLVEKSKSISSTILPDSGKTSL 271
+G S + ++S + E+ + K I+P T+ + DL+EK+K I +L GK
Sbjct: 7 MGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGE 66
Query: 272 GNKISTLINKEISEPTKKVNIIPSTILKITDL---------VEKSKSISSTIFEDLKMSS 424
+ + + + P N++ S I ++ +E I T EDL
Sbjct: 67 DGTVQGTL-ESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFDE 125
Query: 425 SDNKIIPLITK 457
D PL+ K
Sbjct: 126 LDKLGFPLVVK 136
Score = 30.4 bits (67), Expect = 7.3
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +2
Query: 11 KVNIIPSTILKITDLVEKSKSISSTILPDLGKTSPDNKISTLIKKEISEPTKKVNIIPST 190
K I+P T+ + DL+EK+K I +L GK D + + + + P N++ S
Sbjct: 32 KYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTL-ESLGIPYSGSNMLSSG 90
Query: 191 ILKITDLVEKSKSISSTILPD 253
I ++ +K PD
Sbjct: 91 ICMDKNISKKILRYEGIETPD 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,338,606
Number of Sequences: 369166
Number of extensions: 1480256
Number of successful extensions: 5221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5170
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)