Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_E24
(817 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 98 2e-20
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 96 9e-20
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 83 1e-15
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 81 3e-15
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 81 4e-15
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 80 5e-15
sp|Q8JI38|CRVP_LATSE Latisemin precursor 80 5e-15
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 80 9e-15
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 79 2e-14
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 78 3e-14
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 98.2 bits (243), Expect = 2e-20
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Frame = +3
Query: 96 RALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKYGENLASSFNSKPGYIFT 269
R H VP L L +L + AQ+Y++ LA T HS S G+ GENLA + Y T
Sbjct: 21 RQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA-----SYDQT 75
Query: 270 GDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYK 449
G WY EIK+Y F + +G GHF+ +VWK+TK G G+A S+G+ +V +Y
Sbjct: 76 GKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKASASDGSSFVVARYF 134
Query: 450 PPGNFL--GKFKENILSP 497
P GN + G F+EN+L P
Sbjct: 135 PAGNVVNEGFFEENVLPP 152
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 96.3 bits (238), Expect = 9e-20
Identities = 57/138 (41%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Frame = +3
Query: 96 RALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKYGENLASSFNSKPGYIFT 269
RA H VP L L L + AQ+Y++ LA T HS S G+ GENLA + Y T
Sbjct: 21 RAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWA-----SYDQT 75
Query: 270 GDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYK 449
G WY EIK Y F + +G GHF+ +VWK+TK G G+A S+G+ +V +Y
Sbjct: 76 GKDVADRWYSEIKSYNFQQPGFTSGT-GHFTAMVWKNTKKIGVGKASASDGSSFVVARYF 134
Query: 450 PPGNFL--GKFKENILSP 497
P GN + G F+EN+ P
Sbjct: 135 PAGNIVNQGFFEENVPPP 152
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 82.8 bits (203), Expect = 1e-15
Identities = 57/136 (41%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +3
Query: 90 RLRALHRVPNLTLDWD--LAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYI 263
+ RALH V L W LA AQ YAD+ + +HS +G YGENLA GY
Sbjct: 35 KFRALH-VDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLAL------GYT 85
Query: 264 FTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKC-SNGNFIIVG 440
TG A WY EI Y ++ GHF+QVVWK T G G C + N IV
Sbjct: 86 DTG--AVDAWYGEISKYNYSNPGFSEST-GHFTQVVWKSTAEIGCGYKYCGTTWNNYIVC 142
Query: 441 QYKPPGNFLGKFKENI 488
Y PPGN+LG+F E +
Sbjct: 143 SYNPPGNYLGEFAEEV 158
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 81.3 bits (199), Expect = 3e-15
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Frame = +3
Query: 96 RALHR-VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTG 272
RALH+ P L+ LA AQ+YAD + + +HS G YGENLA ++ G
Sbjct: 174 RALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHSG--GPYGENLALGYD--------G 223
Query: 273 DAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSN--GNFIIVGQY 446
AA WY+EI +Y F+ + GHF+QVVWK T G G C G+++I Y
Sbjct: 224 PAAVDAWYNEISNYDFSNPGFSSNT-GHFTQVVWKSTTQVGCGIKTCGGAWGDYVIC-SY 281
Query: 447 KPPGNFLGKFKENI 488
P GN+ G++ +N+
Sbjct: 282 DPAGNYEGEYADNV 295
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 80.9 bits (198), Expect = 4e-15
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 111 VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQN 290
V LT D +A AQ YA +LA + HS G+YGENLA G T A +
Sbjct: 50 VEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----SGDFMTAAKAVEM 103
Query: 291 WYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKPPGNFL 467
W DE + Y + G++ GH++QVVW+++ G R +C+NG +++ Y PPGN+
Sbjct: 104 WVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGNYR 163
Query: 468 GK 473
G+
Sbjct: 164 GE 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 80.5 bits (197), Expect = 5e-15
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +3
Query: 111 VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQN 290
V LT D +A AQ Y +LA + HS G+YGENLA G T A +
Sbjct: 50 VEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----SGDFMTAAKAVEM 103
Query: 291 WYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKPPGNFL 467
W DE + Y + G++ GH++QVVW+++ G R KC+NG +++ Y PPGN +
Sbjct: 104 WVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVI 163
Query: 468 GK 473
G+
Sbjct: 164 GQ 165
>sp|Q8JI38|CRVP_LATSE Latisemin precursor
Length = 238
Score = 80.5 bits (197), Expect = 5e-15
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Frame = +3
Query: 120 LTLDW--DLAKSAQEYADKLAKTNSFSHSKSEGKY--GENLASSFNSKPGYIFTGDAATQ 287
L ++W D A++AQ +AD+ + +S SH ++ GK+ GENL S S+P + Q
Sbjct: 56 LQMEWNSDAAQNAQRWADRCSFAHSPSHLRTVGKFSCGENLFMS--SQP---YAWSRVIQ 110
Query: 288 NWYDEIKDYKFNEEAQQTGK-IGHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKPPGNF 464
+WYDE K++ ++ A G IGH++Q+VW + L G A+CS+ ++ V QY P GN
Sbjct: 111 SWYDENKNFIYDVGANPPGSVIGHYTQIVWYKSHLLGCAAARCSSSKYLYVCQYCPAGNI 170
Query: 465 LG 470
+G
Sbjct: 171 IG 172
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 79.7 bits (195), Expect = 9e-15
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 111 VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGDAATQN 290
V LT D +A AQ YA +LA + HS G+YGENLA G T A +
Sbjct: 50 VEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----SGDFLTAAKAVEM 103
Query: 291 WYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKPPGNFL 467
W +E + Y + G++ GH++QVVW+++ G R +C+NG +I+ Y PPGN +
Sbjct: 104 WVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPGNVI 163
Query: 468 GK 473
GK
Sbjct: 164 GK 165
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 78.6 bits (192), Expect = 2e-14
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +3
Query: 96 RALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGD 275
R+ V +T D +A A++YA A HS + +YGENLA F S G+ TG
Sbjct: 43 RSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHS-GDPRYGENLA--FGS--GFELTGR 97
Query: 276 AATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKP 452
A W E DY N GK+ GH++QVVW+++ G R +C+NG + I Y P
Sbjct: 98 NAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITCNYSP 157
Query: 453 PGNFLGK 473
PGN+ G+
Sbjct: 158 PGNYAGQ 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 78.2 bits (191), Expect = 3e-14
Identities = 51/127 (40%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +3
Query: 96 RALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYIFTGD 275
RA V ++ D +LA AQ YA+ A + HS + GENLA K G FTG
Sbjct: 39 RAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA----GENLA-----KGGGDFTGR 89
Query: 276 AATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVGQYKP 452
AA Q W E DY + GK+ GH++QVVW+++ G GRA+C+NG + I Y P
Sbjct: 90 AAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDP 149
Query: 453 PGNFLGK 473
GN++G+
Sbjct: 150 VGNWVGE 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,048,346
Number of Sequences: 369166
Number of extensions: 1666882
Number of successful extensions: 4651
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4574
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)