Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_E11
(606 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q969T9|WBP2_HUMAN WW domain-binding protein 2 (WBP-2) 40 0.005
sp|P97765|WBP2_MOUSE WW domain-binding protein 2 (WBP-2) 38 0.017
sp|Q8R478|WBP2_RAT WW domain-binding protein 2 (WBP-2) 38 0.023
sp|Q10207|YBX1_SCHPO Hypothetical protein C17D1.01 in chrom... 32 1.3
sp|Q9NY99|SNTG2_HUMAN Gamma-2-syntrophin (G2SYN) (Syntrophi... 31 2.1
sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precurso... 30 3.6
sp|Q925E0|SNTG2_MOUSE Gamma-2-syntrophin (G2SYN) (Syntrophi... 30 4.8
sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precurso... 30 4.8
sp|P70325|TBX4_MOUSE T-box transcription factor TBX4 (T-box... 29 8.1
sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphe... 29 8.1
>sp|Q969T9|WBP2_HUMAN WW domain-binding protein 2 (WBP-2)
Length = 261
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +1
Query: 271 VPQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSYSFVD 450
V P +P+ E +A +A YY+ NPH+VY+ S PP PP Y D
Sbjct: 208 VSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNVYMPTSQPPP----------PPYYPPED 257
Query: 451 KK 456
KK
Sbjct: 258 KK 259
>sp|P97765|WBP2_MOUSE WW domain-binding protein 2 (WBP-2)
Length = 261
Score = 38.1 bits (87), Expect = 0.017
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +1
Query: 271 VPQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSYSFVD 450
V P P E +A +A YY+ NPH+VY+ S PP PP Y D
Sbjct: 208 VSGPSAPATPAAEAKAAEAAASAYYNPGNPHNVYMPTSQPPP----------PPYYPPED 257
Query: 451 KK 456
KK
Sbjct: 258 KK 259
>sp|Q8R478|WBP2_RAT WW domain-binding protein 2 (WBP-2)
Length = 262
Score = 37.7 bits (86), Expect = 0.023
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +1
Query: 271 VPQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSYSFVD 450
V P P E +A +A YY+ NPH+VY+ S PP PP Y D
Sbjct: 209 VSGPSAPPTPAAEAKAAEAAASAYYNPGNPHNVYMPTSQPPP----------PPYYPPED 258
Query: 451 KK 456
KK
Sbjct: 259 KK 260
>sp|Q10207|YBX1_SCHPO Hypothetical protein C17D1.01 in chromosome II
Length = 584
Score = 32.0 bits (71), Expect = 1.3
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 292 TNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGP-PVYGEGTVPSAPPSYS 441
TN N P S S H ++ A S P PV G G V APP +S
Sbjct: 371 TNQSHSQSQNSLHP--LISQSETHSIFSALSETPTPVSGNGNVADAPPDFS 419
>sp|Q9NY99|SNTG2_HUMAN Gamma-2-syntrophin (G2SYN) (Syntrophin 5) (SYN5)
Length = 539
Score = 31.2 bits (69), Expect = 2.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 3 SFIGSW*KSYERSTFME---SGGKFFFCTYGRYILCST 107
S + W KS++R+TFME +G + + C++ +LC T
Sbjct: 407 SELAMWEKSFQRATFMEVQRTGSRTYMCSWQGEMLCFT 444
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1)
(MGFP-1)
Length = 751
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 277 QPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSY 438
+P+ PT Y +A + PP Y + + Y A + PP Y PS PP+Y
Sbjct: 412 KPRYPTTY----KAKPSYPPTYKAKPSYPPTYKAKLSYPPTY--KAKPSYPPTY 459
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 277 QPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSY 438
+P P Y +A + PP Y + + Y A S+ PP Y PS PP+Y
Sbjct: 532 KPSYPPTY----KAKPSYPPTYKAKPSYPQTYKAKSSYPPTY--KAKPSYPPTY 579
Score = 29.3 bits (64), Expect = 8.1
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 274 PQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSY 438
P + +Y + +A + PP Y + + Y A + PP Y PS PP+Y
Sbjct: 547 PTYKAKPSYPQTYKAKSSYPPTYKAKPSYPPTYKAKPSYPPTY--KAKPSYPPTY 599
>sp|Q925E0|SNTG2_MOUSE Gamma-2-syntrophin (G2SYN) (Syntrophin 5) (SYN5)
Length = 539
Score = 30.0 bits (66), Expect = 4.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 3 SFIGSW*KSYERSTFME---SGGKFFFCTYGRYILCST 107
S + W K+++R+TFME +G K + C++ LC T
Sbjct: 407 SELAVWEKAFQRATFMEVQRTGSKTYLCSWQGETLCFT 444
>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precursor (Foot protein 1) (MCFP1)
Length = 872
Score = 30.0 bits (66), Expect = 4.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 274 PQPQIPTNY-DKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVY 402
P +IPT Y K+ +P GYY Y + +N PP+Y
Sbjct: 61 PMNKIPTPYISKKSYPAPYKPKGYYPTKRYQPTYGSKTNYPPIY 104
Score = 30.0 bits (66), Expect = 4.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Frame = +1
Query: 274 PQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTV--------PSAP 429
P+P PT Y ++ + PP Y S S+ Y + PP Y PS P
Sbjct: 594 PKPSYPTPYKQK----PSYPPIYKSKSSYPTAYKSKKTYPPTYKPKITYPPTYKPKPSYP 649
Query: 430 PSY 438
PSY
Sbjct: 650 PSY 652
Score = 29.3 bits (64), Expect = 8.1
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Frame = +1
Query: 274 PQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTV--------PSAP 429
P+P PT Y ++ + PP Y S S+ Y + PP Y PS P
Sbjct: 314 PKPSYPTPYKQK----PSYPPIYKSKSSYPTSYKSKKTYPPTYKPKITYPPTYKPKPSYP 369
Query: 430 PSY 438
PSY
Sbjct: 370 PSY 372
>sp|P70325|TBX4_MOUSE T-box transcription factor TBX4 (T-box protein 4)
Length = 552
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 289 PTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPP 432
P YD++M + P Y S P + + +S+GP + G V PP
Sbjct: 377 PPPYDQQMLS-----PSYCSEVTpreACMYSSSGPEIAGVSAVDDLPP 419
>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphenolic adhesive protein)
(Foot protein 1) (MEFP1)
Length = 875
Score = 29.3 bits (64), Expect = 8.1
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 274 PQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSY 438
P+P P Y + + PP Y + Y A + PP Y PS PP+Y
Sbjct: 143 PKPSYPPTY----KPKPSYPPSYKTKKTYPSSYKAKPSYPPTY--KAKPSYPPTY 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,269,554
Number of Sequences: 369166
Number of extensions: 1404883
Number of successful extensions: 3819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)