Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_E07
(913 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P80313|TCPH_MOUSE T-complex protein 1, eta subunit (TCP-... 492 e-139
sp|Q99832|TCPH_HUMAN T-complex protein 1, eta subunit (TCP-... 490 e-138
sp|Q5R5C8|TCPH_PONPY T-complex protein 1, eta subunit (TCP-... 490 e-138
sp|P87153|TCPH_SCHPO Probable T-complex protein 1, eta subu... 428 e-120
sp|P42943|TCPH_YEAST T-complex protein 1, eta subunit (TCP-... 400 e-111
sp|P54409|TCPH_TETPY T-complex protein 1, eta subunit (TCP-... 364 e-100
sp|O77323|TCPH_PLAF7 T-complex protein 1, eta subunit (TCP-... 349 5e-96
sp|P54410|TCPH_TETTH T-complex protein 1, eta subunit (TCP-... 287 3e-77
sp|P50016|THS_METKA Thermosome subunit (Chaperonin-like com... 214 2e-55
sp|O28045|THSA_ARCFU Thermosome alpha subunit (Thermosome s... 211 2e-54
>sp|P80313|TCPH_MOUSE T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 544
Score = 492 bits (1267), Expect = e-139
Identities = 237/303 (78%), Positives = 272/303 (89%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
G+L+ESQL+AGVAFKKTFSYAGFEMQPK YK PKI+LLN+ELELK+EK+NAEIRV +VE+
Sbjct: 203 GALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEKDNAEIRVHTVED 262
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
YQ IVDAEW ILYDKLE I++SGAK++LSKLPIGDVATQYFADRDMFCAGRV EEDLKRT
Sbjct: 263 YQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 322
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
M ACGG+IQT+V + D LG C+ FEE QIGGER+N F GCP+AKTCTIILRGG+EQFM
Sbjct: 323 MMACGGSIQTSVNALVPDVLGHCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFM 382
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
EETERSLHDAIMIVRRA+KND+VVAGGGAI+ME+SKYLRDYSR I G+ Q IGA A+A
Sbjct: 383 EETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKAL 442
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
E+IPRQLC+NAGFDATNILNKLR +HAQG +W GVDI NE+IADNF+A VWEPA+V+ NA
Sbjct: 443 EIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINNENIADNFQAFVWEPAMVRINA 502
Query: 903 ITA 911
+TA
Sbjct: 503 LTA 505
>sp|Q99832|TCPH_HUMAN T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef
interacting protein)
Length = 543
Score = 490 bits (1262), Expect = e-138
Identities = 237/303 (78%), Positives = 270/303 (89%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
G+L++SQL+AGVAFKKTFSYAGFEMQPK Y PKI+LLN+ELELK+EK+NAEIRV +VE+
Sbjct: 203 GALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVED 262
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
YQ IVDAEW ILYDKLE I+ SGAK+VLSKLPIGDVATQYFADRDMFCAGRV EEDLKRT
Sbjct: 263 YQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 322
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
M ACGG+IQT+V ++ D LG+C+ FEE QIGGER+N F GCP+AKTCT ILRGG+EQFM
Sbjct: 323 MMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFM 382
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
EETERSLHDAIMIVRRA+KND+VVAGGGAI+ME+SKYLRDYSR I G+ Q IGA A+A
Sbjct: 383 EETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKAL 442
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
E+IPRQLC+NAGFDATNILNKLR +HAQG W GVDI NEDIADNFEA VWEPA+V+ NA
Sbjct: 443 EIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINA 502
Query: 903 ITA 911
+TA
Sbjct: 503 LTA 505
>sp|Q5R5C8|TCPH_PONPY T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 543
Score = 490 bits (1261), Expect = e-138
Identities = 236/303 (77%), Positives = 270/303 (89%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
G+L++SQL+AGVAFKKTFSYAGFEMQPK Y PK++LLN+ELELK+EK+NAEIRV +VE+
Sbjct: 203 GALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELELKAEKDNAEIRVHTVED 262
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
YQ IVDAEW ILYDKLE I+ SGAK+VLSKLPIGDVATQYFADRDMFCAGRV EEDLKRT
Sbjct: 263 YQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT 322
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
M ACGG+IQT+V ++ D LG+C+ FEE QIGGER+N F GCP+AKTCT ILRGG+EQFM
Sbjct: 323 MMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFM 382
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
EETERSLHDAIMIVRRA+KND+VVAGGGAI+ME+SKYLRDYSR I G+ Q IGA A+A
Sbjct: 383 EETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKAL 442
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
E+IPRQLC+NAGFDATNILNKLR +HAQG W GVDI NEDIADNFEA VWEPA+V+ NA
Sbjct: 443 EIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINA 502
Query: 903 ITA 911
+TA
Sbjct: 503 LTA 505
>sp|P87153|TCPH_SCHPO Probable T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 558
Score = 428 bits (1101), Expect = e-120
Identities = 202/301 (67%), Positives = 254/301 (84%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
G++++S L+ GVAFKKTFSYAGFE QPK +K PKI L++ELELK+EK+NAE+RV V+E
Sbjct: 208 GAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELELKAEKDNAEVRVDKVQE 267
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
YQ IVDAEW+I++ KLEAI +GAK+VLSKLPIGD+ATQYFADRD+FCAGRV +DL R
Sbjct: 268 YQNIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLATQYFADRDIFCAGRVAADDLNRV 327
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
+ A GG+IQ+T +I + LG C++FEE QIGG+RFN+F GCP+AKTCT+ILRGG++QF+
Sbjct: 328 VQAVGGSIQSTCSNIEEKHLGTCDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFI 387
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
E ERSLHDAIMIV+ A+KN+ VVAGGGA +ME+SKYLRDYS I G+ Q FI A AR+
Sbjct: 388 AEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSL 447
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
EVIPRQLC+NAGFD+TNILNKLR +HA+G++W GVD+ +E +A+NFE VWEP+ VKSNA
Sbjct: 448 EVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNA 507
Query: 903 I 905
I
Sbjct: 508 I 508
>sp|P42943|TCPH_YEAST T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 550
Score = 400 bits (1029), Expect = e-111
Identities = 191/303 (63%), Positives = 241/303 (79%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
G+++ES I GVAFKKTFSYAGFE QPK + PKI LN+ELELK+EK+NAE+RV VE+
Sbjct: 207 GAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVED 266
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
YQ IVDAEWQ++++KL + ++GA IVLSKLPIGD+ATQ+FADR++FCAGRV+ +D+ R
Sbjct: 267 YQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRV 326
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
+ A GG+IQ+T DI + LG C FEE+QIG ER+N+F GCP+AKTCT++LRGG+EQ +
Sbjct: 327 IQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVI 386
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
E ERSLHDAIMIV+RA++N +VAGGGA +ME+SK LRDYS+ I G+ Q I A A+A
Sbjct: 387 AEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKAL 446
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
EVIPRQLCENAGFDA ILNKLR H++G+ W GV E+I DNF VWEPALVK NA
Sbjct: 447 EVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINA 506
Query: 903 ITA 911
+ +
Sbjct: 507 LNS 509
>sp|P54409|TCPH_TETPY T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 558
Score = 364 bits (934), Expect = e-100
Identities = 186/308 (60%), Positives = 234/308 (75%), Gaps = 5/308 (1%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
GS+ +S L+ GVAFKKTFSYAGFE QPK + PKI LLNIELELK+EKENAEIR+ + ++
Sbjct: 203 GSVTDSVLVKGVAFKKTFSYAGFEQQPKKFANPKICLLNIELELKAEKENAEIRIDNPDD 262
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
Y+ IVDAEW+++Y+KL I +SGA+IVLSKLPIGD+ATQYFADR++FCAGRV ED+KR
Sbjct: 263 YKSIVDAEWELIYEKLRKIVESGAQIVLSKLPIGDLATQYFADRNIFCAGRVDAEDIKRV 322
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
A G +QTTV ++ D LG C FEE QIG ER+N+F CP +K+ TIILRGG+EQF+
Sbjct: 323 QKATGSIVQTTVNGLSQDVLGTCGMFEEQQIGAERYNLFQDCPHSKSATIILRGGAEQFI 382
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
E ERSL+DAIMIVRR MK + +V GGGAI++EIS+ LR +SR G+ Q I A A+A
Sbjct: 383 AEAERSLNDAIMIVRRCMKANKIVPGGGAIELEISRLLRLHSRKTEGKVQLVINAFAKAL 442
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHA----QGKIWCGVDIMNED-IADNFEACVWEPAL 887
EVIP+ + +NAG D+ +LNKLRQKHA Q K + GVDI D I +NFE VWEP +
Sbjct: 443 EVIPKTIADNAGHDSIQVLNKLRQKHALESDQSKNF-GVDINAVDGIGNNFENFVWEPII 501
Query: 888 VKSNAITA 911
V+ NA +A
Sbjct: 502 VRKNAFSA 509
>sp|O77323|TCPH_PLAF7 T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 539
Score = 349 bits (896), Expect = 5e-96
Identities = 174/303 (57%), Positives = 225/303 (74%), Gaps = 2/303 (0%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
GS ++QLI GVAFKKTFSYAGFE QPK + PKI LLN+ELELK+EKENAE+R+ + E
Sbjct: 205 GSCLDTQLIYGVAFKKTFSYAGFEQQPKKFINPKILLLNVELELKAEKENAEVRIENPNE 264
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
Y IV AEW I++ KL I GA IVLSKLPIGD+ATQ+FAD D+FCAGRV + DLKRT
Sbjct: 265 YNSIVQAEWDIIFKKLNLIKDCGANIVLSKLPIGDIATQFFADHDIFCAGRVEDADLKRT 324
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
A G +QT++ ++ DD LG C FEEVQIG ER+NIF C + K+ TIILRGG++QF+
Sbjct: 325 ANATGALVQTSLFNLNDDVLGTCGVFEEVQIGNERYNIFKECLKTKSVTIILRGGAKQFI 384
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
EE ERS++DAIMIV R + N +V G G+I+M++SKYLR YSR+I ++Q + + A+A
Sbjct: 385 EEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKAL 444
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQ--GKIWCGVDIMNEDIADNFEACVWEPALVKS 896
E IPR L NAG+D+T+ILNKLR+KH++ IW GVD M DI + ++ C++E +K
Sbjct: 445 ESIPRHLSHNAGYDSTDILNKLRKKHSEQTSDIWYGVDCMEGDIINAYDNCIFEVTKIKR 504
Query: 897 NAI 905
N I
Sbjct: 505 NVI 507
>sp|P54410|TCPH_TETTH T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 353
Score = 287 bits (734), Expect = 3e-77
Identities = 137/209 (65%), Positives = 170/209 (81%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
GS+ +S L++GVAFKKTFSYAGFE QPK + PKI LLNIELELK+EKENAEIR+ + ++
Sbjct: 145 GSVTDSFLVSGVAFKKTFSYAGFEQQPKKFNNPKICLLNIELELKAEKENAEIRIENPDD 204
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
Y+ IVDAEW+++Y+KL I +SGA IVLSKLPIGD+ATQYFADR++FCAGRV ED+KR
Sbjct: 205 YKSIVDAEWELIYEKLRKIVESGANIVLSKLPIGDLATQYFADRNIFCAGRVDAEDMKRV 264
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
+ G +QTTV +T+D LG C FEEVQIG ER+N+F CP +K+ TIILRGG+EQF+
Sbjct: 265 QKSTGAIVQTTVNGLTEDVLGTCNQFEEVQIGAERYNLFKDCPHSKSATIILRGGAEQFI 324
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGA 629
E ERSL+DAIMIVRR MK + +V GGGA
Sbjct: 325 AEAERSLNDAIMIVRRCMKANKIVPGGGA 353
>sp|P50016|THS_METKA Thermosome subunit (Chaperonin-like complex) (CLIC)
Length = 545
Score = 214 bits (546), Expect = 2e-55
Identities = 105/303 (34%), Positives = 186/303 (61%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
G L++++L+ G+ K + G P+ + KI+LLN +E+K + +AEIR++ E+
Sbjct: 210 GGLEDTELVKGMVIDKERVHPGM---PRRVENAKIALLNCPIEVKETETDAEIRITDPEQ 266
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
Q ++ E ++L + ++ I ++GA +V + I D+A Y A + + RV + D+++
Sbjct: 267 LQAFIEEEERMLSEMVDKIAETGANVVFCQKGIDDLAQHYLAKKGILAVRRVKKSDMQKL 326
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
A G I T + D++++ LG+ E EE ++ G++ GC + K TI++RGG+E +
Sbjct: 327 ARATGARIVTNIDDLSEEDLGEAEVVEEKKVAGDKMIFVEGCKDPKAVTILIRGGTEHVV 386
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
+E ER++ DAI +V A+++ VVAGGGA ++E+++ LRD++ + GR+Q + A A A
Sbjct: 387 DEAERAIEDAIGVVAAALEDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADAL 446
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
E+IPR L EN+G D ++L +LR KH G++ G+D+ + D+ D E V EP VK+ A
Sbjct: 447 EIIPRTLAENSGLDPIDVLVQLRAKHEDGQVTAGIDVYDGDVKDMLEEGVVEPLRVKTQA 506
Query: 903 ITA 911
+ +
Sbjct: 507 LAS 509
>sp|O28045|THSA_ARCFU Thermosome alpha subunit (Thermosome subunit 1) (Chaperonin alpha
subunit)
Length = 545
Score = 211 bits (537), Expect = 2e-54
Identities = 112/303 (36%), Positives = 183/303 (60%)
Frame = +3
Query: 3 GSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELELKSEKENAEIRVSSVEE 182
GS+ +++L+ G+ K + G PK K KI++L LE+K + +AEIR++ ++
Sbjct: 208 GSVADTKLVNGIVIDKEVVHPGM---PKRVKNAKIAVLKAALEVKETETDAEIRITDPDQ 264
Query: 183 YQRIVDAEWQILYDKLEAIYKSGAKIVLSKLPIGDVATQYFADRDMFCAGRVTEEDLKRT 362
+ ++ E ++L + ++ + ++GA +V + I D+A Y A + RV + D+++
Sbjct: 265 LMKFIEQEEKMLKEMVDRLAEAGANVVFCQKGIDDLAQYYLAKAGILAVRRVKQSDIEKI 324
Query: 363 MAACGGAIQTTVKDITDDTLGKCESFEEVQIGGERFNIFVGCPEAKTCTIILRGGSEQFM 542
ACG I T +++IT LG+ E EE ++G E+ GC K TI++RGGSE +
Sbjct: 325 AKACGAKIITDLREITSADLGEAELVEERKVGDEKMVFIEGCKNPKAVTILIRGGSEHVV 384
Query: 543 EETERSLHDAIMIVRRAMKNDAVVAGGGAIDMEISKYLRDYSRNIHGRDQQFIGAMARAF 722
+E ERSL DAI +V+ A+++ VVAGGGA ++E++ +RD++ + GR+Q A A A
Sbjct: 385 DEVERSLQDAIKVVKTALESGKVVAGGGAPEIEVALKIRDWAPTLGGREQLAAEAFASAL 444
Query: 723 EVIPRQLCENAGFDATNILNKLRQKHAQGKIWCGVDIMNEDIADNFEACVWEPALVKSNA 902
EVIPR L EN+G D +IL +LR+ H +GK GVD+ + ++A E V EP VK+ A
Sbjct: 445 EVIPRALAENSGLDPIDILVELRKAHEEGKTTYGVDVFSGEVACMKERGVLEPLKVKTQA 504
Query: 903 ITA 911
IT+
Sbjct: 505 ITS 507
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,430,627
Number of Sequences: 369166
Number of extensions: 1982999
Number of successful extensions: 6659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6364
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)