Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_E05
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UKR8|TNS16_HUMAN Tetraspanin-16 (Tspan-16) (Transmembr... 36 0.038
sp|P08962|CD63_HUMAN CD63 antigen (Melanoma-associated anti... 36 0.050
sp|O95858|TSN15_HUMAN Tetraspanin-15 (Tspan-15) (Transmembr... 34 0.14
sp|P28648|CD63_RAT CD63 antigen (AD1 antigen) 33 0.32
sp|Q28709|CD63_RABIT CD63 antigen 33 0.32
sp|Q8BJU2|TSN9_MOUSE Tetraspanin-9 (Tspan-9) (Tetraspan NET-5) 32 0.72
sp|Q8NG11|TSN14_HUMAN Tetraspanin-14 (Tspan-14) (Transmembr... 32 0.72
sp|O75954|TSN9_HUMAN Tetraspanin-9 (Tspan-9) (Tetraspan NET-5) 32 0.93
sp|Q8QZY6|TSN14_MOUSE Tetraspanin-14 (Tspan-14) (Transmembr... 31 1.2
sp|P41731|CD63_MOUSE CD63 antigen 31 1.6
>sp|Q9UKR8|TNS16_HUMAN Tetraspanin-16 (Tspan-16) (Transmembrane 4 superfamily member 16)
(Tetraspanin TM4-B)
Length = 245
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +1
Query: 7 DLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMVGQTLTPADSNCTYYPTVNNSY 186
+L+ K KCCG ++ DF ++ + P SCC +G +C N
Sbjct: 145 NLVMEKLKCCGVNNYTDFSGSSFEMTTGHTYPRSCCKSIGSV------SCDGRDVSPNVI 198
Query: 187 FNTGCYSQLWNIINSYS 237
GC+ +L I + S
Sbjct: 199 HQKGCFHKLLKITKTQS 215
>sp|P08962|CD63_HUMAN CD63 antigen (Melanoma-associated antigen ME491)
(Lysosome-associated membrane glycoprotein 3) (LAMP-3)
(Ocular melanoma-associated antigen) (OMA81H)
(Granulophysin) (Tetraspanin-30) (Tspan-30)
Length = 238
Score = 35.8 bits (81), Expect = 0.050
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMV 123
I+D +QA FKCCGA++ D+ +K+ +P SCC+ V
Sbjct: 135 ILDRMQADFKCCGAANYTDWEKIPSMSKNR--VPDSCCINV 173
>sp|O95858|TSN15_HUMAN Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily member 15)
(Tetraspan NET-7)
Length = 294
Score = 34.3 bits (77), Expect = 0.14
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYG-----IIPFSCCMMVGQTLTPADSNCTYY 165
I+D +Q KFKCCG D+ N ++ S +P++CC+ + T + Y
Sbjct: 144 IMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLACGVPYTCCI---RNTTEVVNTMCGY 200
Query: 166 PTVNNSYFN 192
T++ F+
Sbjct: 201 KTIDKERFS 209
>sp|P28648|CD63_RAT CD63 antigen (AD1 antigen)
Length = 238
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMV 123
I+D +Q + KCCGAS+ D+ G K +P SCC+ +
Sbjct: 135 ILDKLQKENKCCGASNYTDWERIPGMAKDR--VPDSCCINI 173
>sp|Q28709|CD63_RABIT CD63 antigen
Length = 238
Score = 33.1 bits (74), Expect = 0.32
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMV 123
I+D +Q F CCGA++ D+ G + +P SCC+ V
Sbjct: 135 ILDRMQKDFTCCGAANYTDWATIPGMTRDR--VPDSCCVNV 173
>sp|Q8BJU2|TSN9_MOUSE Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
Length = 239
Score = 32.0 bits (71), Expect = 0.72
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 7 DLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMVGQTLTPADSNCTYYPTVNNSY 186
++IQA+ +CCG + D+ G N +P CCM Q C T
Sbjct: 139 NIIQAEMRCCGVTDYTDWYPVLGEN----TVPDRCCMENSQ-------GCGRNST--TPL 185
Query: 187 FNTGCYS--QLW 216
+ TGCY +LW
Sbjct: 186 WRTGCYEKVKLW 197
>sp|Q8NG11|TSN14_HUMAN Tetraspanin-14 (Tspan-14) (Transmembrane 4 superfamily member 14)
(DC-TM4F2)
Length = 270
Score = 32.0 bits (71), Expect = 0.72
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYGI-------IPFSCCM-----MVGQTLTPA 144
+ID +Q +CCGA D+ N +N S +PFSCC+ V T
Sbjct: 143 LIDSLQKANQCCGAYGPEDWDLNVYFNCSGASYSREKCGVPFSCCVPDPAQKVVNTQCGY 202
Query: 145 DSNCTYYPTVNNSYFNTGCYSQL 213
D + S F GC L
Sbjct: 203 DVRIQLKSKWDESIFTKGCIQAL 225
>sp|O75954|TSN9_HUMAN Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
Length = 239
Score = 31.6 bits (70), Expect = 0.93
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 7 DLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMVGQTLTPADSNCTYYPTVNNSY 186
++IQA+ +CCG + D+ G N +P CCM Q N T
Sbjct: 139 NIIQAEMRCCGVTDYTDWYPVLGEN----TVPDRCCMENSQ---GCGRNAT------TPL 185
Query: 187 FNTGCYSQL 213
+ TGCY ++
Sbjct: 186 WRTGCYEKV 194
>sp|Q8QZY6|TSN14_MOUSE Tetraspanin-14 (Tspan-14) (Transmembrane 4 superfamily member 14)
Length = 270
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYGI-------IPFSCCM 117
+ID +Q +CCGA D+ N +N S +PFSCC+
Sbjct: 143 LIDSLQKANQCCGAYGPEDWDLNVYFNCSGASYSREKCGVPFSCCV 188
>sp|P41731|CD63_MOUSE CD63 antigen
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 1 IIDLIQAKFKCCGASSSADFVANTGYNKSYGIIPFSCCMMV 123
I+D +Q + CCGAS+ D+ G K +P SCC+ +
Sbjct: 135 ILDKLQKENNCCGASNYTDWENIPGMAKDR--VPDSCCINI 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,907,330
Number of Sequences: 369166
Number of extensions: 879309
Number of successful extensions: 1928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1926
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)