Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_E01
(551 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8) 199 3e-51
sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8) 199 3e-51
sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8) 199 3e-51
sp|Q06331|TBA_OCTDO Tubulin alpha chain 199 4e-51
sp|P06604|TBA2_DROME Tubulin alpha-2 chain 197 2e-50
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 196 2e-50
sp|P02553|TBA_LYTPI Tubulin alpha chain 196 3e-50
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 196 4e-50
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 196 4e-50
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 196 4e-50
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 199 bits (507), Expect = 3e-51
Identities = 93/134 (69%), Positives = 106/134 (79%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEEDSF 403
D+F E E + F
Sbjct: 436 GTDSFEEENEGEEF 449
>sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 199 bits (507), Expect = 3e-51
Identities = 93/134 (69%), Positives = 106/134 (79%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEEDSF 403
D+F E E + F
Sbjct: 436 GTDSFEEENEGEEF 449
>sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 199 bits (507), Expect = 3e-51
Identities = 93/134 (69%), Positives = 106/134 (79%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEEDSF 403
D+F E E + F
Sbjct: 436 GTDSFEEENEGEEF 449
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
Length = 451
Score = 199 bits (506), Expect = 4e-51
Identities = 92/131 (70%), Positives = 105/131 (80%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTA+ EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEE 394
+DTF EE
Sbjct: 436 GLDTFEAEEEE 446
>sp|P06604|TBA2_DROME Tubulin alpha-2 chain
Length = 449
Score = 197 bits (500), Expect = 2e-50
Identities = 91/134 (67%), Positives = 107/134 (79%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEEDSF 403
+D+ E E++ +
Sbjct: 436 GIDSTTELGEDEEY 449
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 196 bits (499), Expect = 2e-50
Identities = 91/132 (68%), Positives = 107/132 (81%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
C+L+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT++P GDL KVSRAV
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEED 397
+D+ EE+
Sbjct: 436 GVDSADAEGEEE 447
>sp|P02553|TBA_LYTPI Tubulin alpha chain
Length = 161
Score = 196 bits (498), Expect = 3e-50
Identities = 91/132 (68%), Positives = 105/132 (79%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 26 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 85
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 86 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 145
Query: 362 AMDTFYEPLEED 397
+D+ EE+
Sbjct: 146 GVDSVEGEAEEE 157
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 196 bits (497), Expect = 4e-50
Identities = 91/131 (69%), Positives = 104/131 (79%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDTFYEPLEE 394
+D+ EE
Sbjct: 436 GVDSVEAEAEE 446
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 196 bits (497), Expect = 4e-50
Identities = 90/124 (72%), Positives = 102/124 (82%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDT 373
MD+
Sbjct: 436 GMDS 439
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 196 bits (497), Expect = 4e-50
Identities = 90/124 (72%), Positives = 102/124 (82%)
Frame = +2
Query: 2 CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
CML+RGDVVPKDVN QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 362 AMDT 373
MD+
Sbjct: 436 GMDS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,445,339
Number of Sequences: 369166
Number of extensions: 1053620
Number of successful extensions: 2773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2572
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)