Planarian EST Database


Dr_sW_017_E01

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_017_E01
         (551 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NY65|TBA8_HUMAN  Tubulin alpha-8 chain (Alpha-tubulin 8)     199   3e-51
sp|Q9JJZ2|TBA8_MOUSE  Tubulin alpha-8 chain (Alpha-tubulin 8)     199   3e-51
sp|Q6AY56|TBA8_RAT  Tubulin alpha-8 chain (Alpha-tubulin 8)       199   3e-51
sp|Q06331|TBA_OCTDO  Tubulin alpha chain                          199   4e-51
sp|P06604|TBA2_DROME  Tubulin alpha-2 chain                       197   2e-50
sp|Q94572|TBA3_HOMAM  Tubulin alpha-3 chain (Alpha-III tubulin)   196   2e-50
sp|P02553|TBA_LYTPI  Tubulin alpha chain                          196   3e-50
sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   196   4e-50
sp|P06605|TBA3_DROME  Tubulin alpha-3 chain                       196   4e-50
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       196   4e-50
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
          Length = 449

 Score =  199 bits (507), Expect = 3e-51
 Identities = 93/134 (69%), Positives = 106/134 (79%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEEDSF 403
             D+F E  E + F
Sbjct: 436 GTDSFEEENEGEEF 449
>sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8)
          Length = 449

 Score =  199 bits (507), Expect = 3e-51
 Identities = 93/134 (69%), Positives = 106/134 (79%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEEDSF 403
             D+F E  E + F
Sbjct: 436 GTDSFEEENEGEEF 449
>sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8)
          Length = 449

 Score =  199 bits (507), Expect = 3e-51
 Identities = 93/134 (69%), Positives = 106/134 (79%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEEDSF 403
             D+F E  E + F
Sbjct: 436 GTDSFEEENEGEEF 449
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
          Length = 451

 Score =  199 bits (506), Expect = 4e-51
 Identities = 92/131 (70%), Positives = 105/131 (80%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTA+ EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEE 394
            +DTF    EE
Sbjct: 436 GLDTFEAEEEE 446
>sp|P06604|TBA2_DROME Tubulin alpha-2 chain
          Length = 449

 Score =  197 bits (500), Expect = 2e-50
 Identities = 91/134 (67%), Positives = 107/134 (79%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEEDSF 403
            +D+  E  E++ +
Sbjct: 436 GIDSTTELGEDEEY 449
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
          Length = 451

 Score =  196 bits (499), Expect = 2e-50
 Identities = 91/132 (68%), Positives = 107/132 (81%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           C+L+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT++P GDL KVSRAV
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEED 397
            +D+     EE+
Sbjct: 436 GVDSADAEGEEE 447
>sp|P02553|TBA_LYTPI Tubulin alpha chain
          Length = 161

 Score =  196 bits (498), Expect = 3e-50
 Identities = 91/132 (68%), Positives = 105/132 (79%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 26  CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 85

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 86  CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 145

Query: 362 AMDTFYEPLEED 397
            +D+     EE+
Sbjct: 146 GVDSVEGEAEEE 157
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  196 bits (497), Expect = 4e-50
 Identities = 91/131 (69%), Positives = 104/131 (79%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDTFYEPLEE 394
            +D+     EE
Sbjct: 436 GVDSVEAEAEE 446
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
          Length = 450

 Score =  196 bits (497), Expect = 4e-50
 Identities = 90/124 (72%), Positives = 102/124 (82%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDT 373
            MD+
Sbjct: 436 GMDS 439
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  196 bits (497), Expect = 4e-50
 Identities = 90/124 (72%), Positives = 102/124 (82%)
 Frame = +2

Query: 2   CMLFRGDVVPKDVNXXXXXXXXXXXXQFVDWCPTGFKVGINYQPPTSIPDGDLGKVSRAV 181
           CML+RGDVVPKDVN            QFVDWCPTGFKVGINYQPPT +P GDL KV RAV
Sbjct: 316 CMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375

Query: 182 CMLSNTTAIVEAWARLNRQFNLMFHKRAFVHWYVGEGMEEGEFLEAKDDIASLEQDYNEV 361
           CMLSNTTAI EAWARL+ +F+LM+ KRAFVHWYVGEGMEEGEF EA++D+A+LE+DY EV
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435

Query: 362 AMDT 373
            MD+
Sbjct: 436 GMDS 439
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,445,339
Number of Sequences: 369166
Number of extensions: 1053620
Number of successful extensions: 2773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2572
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)