Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_D21
(735 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 457 e-128
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 457 e-128
sp|P53458|ACT5_DIPDE Actin-5 456 e-128
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 456 e-128
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 456 e-128
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 456 e-128
sp|P92176|ACT2_LUMTE Actin-2 455 e-128
sp|P12716|ACTC_PISOC Actin, cytoplasmic 455 e-128
sp|P53470|ACT1_SCHMA Actin-1 455 e-128
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 455 e-128
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 457 bits (1175), Expect = e-128
Identities = 223/238 (93%), Positives = 233/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEA+FQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 259 PEAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 457 bits (1175), Expect = e-128
Identities = 223/238 (93%), Positives = 234/238 (98%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEALFQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 259 PEALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 456 bits (1173), Expect = e-128
Identities = 225/238 (94%), Positives = 232/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 134 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 193
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM A++SS+LEKSYELPDGQVITIGNERFRC
Sbjct: 194 YSFTTTAEREIVRDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERFRC 253
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMYPGI+DRMQKEI
Sbjct: 254 PEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEI 313
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
SALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 314 SALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 456 bits (1173), Expect = e-128
Identities = 222/238 (93%), Positives = 233/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEA++QPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 259 PEAMYQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 456 bits (1173), Expect = e-128
Identities = 223/238 (93%), Positives = 232/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA+ SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAATSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEA+FQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 259 PEAVFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 456 bits (1173), Expect = e-128
Identities = 222/238 (93%), Positives = 233/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEA+FQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 259 PEAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 455 bits (1171), Expect = e-128
Identities = 224/238 (94%), Positives = 232/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TASASSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEA+F SFLG+ESVGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TM+PGIADRMQKEI
Sbjct: 259 PEAMFHASFLGMESVGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 455 bits (1171), Expect = e-128
Identities = 222/238 (93%), Positives = 233/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIV DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKE+
Sbjct: 259 PEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEV 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 455 bits (1170), Expect = e-128
Identities = 224/238 (94%), Positives = 233/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY+MKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SS+LEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSALEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEALFQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLY+N VLSGGSTMYPGIADRMQKEI
Sbjct: 259 PEALFQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
SALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 319 SALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 455 bits (1170), Expect = e-128
Identities = 222/238 (93%), Positives = 232/238 (97%)
Frame = +3
Query: 3 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 182
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 183 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 362
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRC 258
Query: 363 PEALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEI 542
PEA FQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 259 PEATFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 318
Query: 543 SALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 716
+ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 TALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,716,422
Number of Sequences: 369166
Number of extensions: 1786493
Number of successful extensions: 5538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5386
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)