Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_D08
(934 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathe... 316 7e-86
sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (... 311 2e-84
sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [... 306 4e-83
sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RS... 306 7e-83
sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [... 296 6e-80
sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase p... 291 2e-78
sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase p... 281 2e-75
sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6... 233 4e-61
sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precu... 228 1e-59
sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5... 227 3e-59
>sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathepsin B light chain; Cathepsin
B heavy chain]
Length = 335
Score = 316 bits (809), Expect = 7e-86
Identities = 154/273 (56%), Positives = 183/273 (67%)
Frame = +2
Query: 116 PLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLGVIKDPNNFKLPKRKPLLNRVRLP 295
PLS +L+N+VN TTWKA +S ++K+ G I KLP+R V LP
Sbjct: 25 PLSDELVNFVNK-QNTTWKAGHNFYNVDLSYVKKLCGAIL--GGPKLPQRDAFAADVVLP 81
Query: 296 TTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLTX 475
+FDAR QWP C +I EIRDQ +CGSCWAFGAVEAI+DR CIHSNG +SAED+LT
Sbjct: 82 ESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTC 141
Query: 476 XXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPYPNCTGE 655
PS AW FW GLV+GG Y H+GC+ Y+ P C HHV G P CTGE
Sbjct: 142 CGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGE 201
Query: 656 FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFPN 835
TPKC K C+ GYS +Y EDK +G SSYSV +N++ IM EI NGPVE AFSVY+DF
Sbjct: 202 GDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLL 261
Query: 836 YKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
YKSGVYQHV+G ++GGHAI+ILGWGVEN TPYW
Sbjct: 262 YKSGVYQHVSGEIMGGHAIRILGWGVENGTPYW 294
>sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (APP secretase) (APPS)
[Contains: Cathepsin B light chain; Cathepsin B heavy
chain]
Length = 339
Score = 311 bits (797), Expect = 2e-84
Identities = 151/279 (54%), Positives = 185/279 (66%)
Frame = +2
Query: 98 SIPMHTPLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLGVIKDPNNFKLPKRKPLL 277
S P PLS +L+NYVN TTW+A +S ++++ G K P+R
Sbjct: 19 SRPSFHPLSDELVNYVNK-RNTTWQAGHNFYNVDMSYLKRLCGTFL--GGPKPPQRVMFT 75
Query: 278 NRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISA 457
++LP +FDAR QWP+C +I EIRDQ +CGSCWAFGAVEAI+DR CIH+N + +SA
Sbjct: 76 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSA 135
Query: 458 EDLLTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPY 637
EDLLT P+ AW FW GLV+GG Y H+GC+ Y+ P C HHV G
Sbjct: 136 EDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSR 195
Query: 638 PNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSV 817
P CTGE TPKC K C+ GYS TY +DK YG +SYSV ++++ IM EI NGPVE AFSV
Sbjct: 196 PPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV 255
Query: 818 YADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
Y+DF YKSGVYQHVTG M+GGHAI+ILGWGVEN TPYW
Sbjct: 256 YSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYW 294
>sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 339
Score = 306 bits (785), Expect = 4e-83
Identities = 149/277 (53%), Positives = 179/277 (64%)
Frame = +2
Query: 104 PMHTPLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLGVIKDPNNFKLPKRKPLLNR 283
P PLS DLINY+N TTW+A IS ++K+ G + KLP R
Sbjct: 21 PSFHPLSDDLINYINK-QNTTWQAGRNFYNVDISYLKKLCGTVL--GGPKLPGRVAFGED 77
Query: 284 VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAED 463
+ LP TFDAR QW C +IG+IRDQ +CGSCWAFGAVEAI+DR CIH+NG +SAED
Sbjct: 78 IDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAED 137
Query: 464 LLTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPYPN 643
LLT PS AW FW GLV+GG Y H+GC Y P C HHV G P
Sbjct: 138 LLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPPCEHHVNGSRPP 197
Query: 644 CTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYA 823
CTGE TP+C K+C+AGYS +Y EDK +G +SYSV ++ + IM EI NGPVE AF+V++
Sbjct: 198 CTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFS 257
Query: 824 DFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
DF YKSGVY+H G M+GGHAI+ILGWGVEN PYW
Sbjct: 258 DFLTYKSGVYKHEAGDMMGGHAIRILGWGVENGVPYW 294
>sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RSG-2) [Contains: Cathepsin B
light chain; Cathepsin B heavy chain]
Length = 339
Score = 306 bits (783), Expect = 7e-83
Identities = 147/278 (52%), Positives = 180/278 (64%), Gaps = 1/278 (0%)
Frame = +2
Query: 104 PMHTPLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLG-VIKDPNNFKLPKRKPLLN 280
P PLS D+INY+N TTW+A IS ++K+ G V+ PN LP+R
Sbjct: 21 PSSHPLSDDMINYINK-QNTTWQAGRNFYNVDISYLKKLCGTVLGGPN---LPERVGFSE 76
Query: 281 RVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAE 460
+ LP +FDAR QW C +I +IRDQ +CGSCWAFGAVEA++DR CIH+NG +SAE
Sbjct: 77 DINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAE 136
Query: 461 DLLTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPYP 640
DLLT PS AW FW GLV+GG Y H+GC Y P C HHV G P
Sbjct: 137 DLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRP 196
Query: 641 NCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVY 820
CTGE TPKC K C+AGYS +Y EDK YG +SYSV +++ IM EI NGPVE AF+V+
Sbjct: 197 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 256
Query: 821 ADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
+DF YKSGVY+H G ++GGHAI+ILGWG+EN PYW
Sbjct: 257 SDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYW 294
>sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 340
Score = 296 bits (758), Expect = 6e-80
Identities = 144/280 (51%), Positives = 179/280 (63%), Gaps = 1/280 (0%)
Frame = +2
Query: 98 SIPMHTPLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLGVIKDPNNFKLPKRKPLL 277
SIP + PLS DL+N++N + TT +A +S ++K+ G K P+R
Sbjct: 19 SIPYYPPLSSDLVNHINKL-NTTGRAGHNFHNTDMSYVKKLCGTFL--GGPKAPERVDFA 75
Query: 278 NRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISA 457
+ LP TFD R QWP C +I EIRDQ +CGSCWAFGAVEAI+DR C+H+N + +SA
Sbjct: 76 EDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSA 135
Query: 458 EDLLTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPY 637
EDLL+ PS AWR+W GLV+GG Y H+GC+ Y P C HHV G
Sbjct: 136 EDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIPPCEHHVNGSR 195
Query: 638 PNCTGE-FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFS 814
P CTGE TP+C + C+ GYS +Y EDK YG +SY V +++ IM EI NGPVE AF
Sbjct: 196 PPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFI 255
Query: 815 VYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
VY DF YKSGVYQHV+G +GGHAI+ILGWGVEN TPYW
Sbjct: 256 VYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGVENGTPYW 295
>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase precursor (Antigen Sj31)
Length = 342
Score = 291 bits (745), Expect = 2e-78
Identities = 138/278 (49%), Positives = 180/278 (64%), Gaps = 5/278 (1%)
Frame = +2
Query: 116 PLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLGVIKDPNNFKLPKRKPLLNR---- 283
PLS ++I+++N WKA + RF S+ D R ++G K+ K R+P ++
Sbjct: 29 PLSDEMISFINEHPDAGWKADKSDRFHSLDDARILMGARKEDAEMKR-NRRPTVDHHDLN 87
Query: 284 VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAED 463
V +P+ FD+R +WP CKSI +IRDQS CGSCWAFGAVEA+TDR CI S G Q+ +SA D
Sbjct: 88 VEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALD 147
Query: 464 LLTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPYPN 643
L++ P AW +W G+VTGG H GCQ Y FPKC HH G YP
Sbjct: 148 LISCCKDCGDGCQGGF-PGVAWDYWVKRGIVTGGSKENHTGCQPYPFPKCEHHTKGKYPA 206
Query: 644 C-TGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVY 820
C T + TP+CK+ CQ GY Y +DK YG SY+V +N++ I ++I+ GPVEAAF VY
Sbjct: 207 CGTKIYKTPQCKQTCQKGYKTPYEQDKHYGDESYNVQNNEKVIQRDIMMYGPVEAAFDVY 266
Query: 821 ADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
DF NYKSG+Y+HVTG ++GGHAI+I+GWGVE TPYW
Sbjct: 267 EDFLNYKSGIYRHVTGSIVGGHAIRIIGWGVEKRTPYW 304
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase precursor (Antigen Sm31)
Length = 340
Score = 281 bits (719), Expect = 2e-75
Identities = 134/278 (48%), Positives = 178/278 (64%), Gaps = 5/278 (1%)
Frame = +2
Query: 116 PLSFDLINYVNYVARTTWKAAPTTRFQSISDIRKVLGVIKDPNNFKLPKRKPLLNR---- 283
PLS D+I+Y+N W+A + RF S+ D R +G ++ + + KR+P ++
Sbjct: 28 PLSDDIISYINEHPNAGWRAEKSNRFHSLDDARIQMGARREEPDLRR-KRRPTVDHNDWN 86
Query: 284 VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAED 463
V +P+ FD+R +WP CKSI IRDQS CGSCW+FGAVEA++DR CI S G Q +SA D
Sbjct: 87 VEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVD 146
Query: 464 LLTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPYPN 643
LLT AW +W G+VT H GC+ Y FPKC HH G YP
Sbjct: 147 LLTCCESCGLGCEGGIL-GPAWDYWVKEGIVTASSKENHTGCEPYPFPKCEHHTKGKYPP 205
Query: 644 CTGE-FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVY 820
C + + TP+CK+ CQ Y Y +DK GKSSY+V ++++AI +EI+ GPVEA+F+VY
Sbjct: 206 CGSKIYNTPRCKQTCQRKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEASFTVY 265
Query: 821 ADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
DF NYKSG+Y+H+TG LGGHAI+I+GWGVEN TPYW
Sbjct: 266 EDFLNYKSGIYKHITGEALGGHAIRIIGWGVENKTPYW 303
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 precursor (Cysteine
protease-related 6)
Length = 379
Score = 233 bits (595), Expect = 4e-61
Identities = 124/281 (44%), Positives = 170/281 (60%), Gaps = 12/281 (4%)
Frame = +2
Query: 128 DLINYVNYVARTTWKAAPTTRFQSI-SDIRKVLGVIKDPNNFKLP-KRKPLLNRVR---- 289
DLI+YVN + W A RF S+ + K + N+ +L K K L++ +
Sbjct: 45 DLIDYVNE-NQNLWTAKKQRRFSSVYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDL 103
Query: 290 -LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDL 466
+P +FD+R WPKC SI IRDQS+CGSCWAFGAVEA++DR CI S+G +SA+DL
Sbjct: 104 DIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDL 163
Query: 467 LTXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHV----IGP 634
L+ P AWR+W G+VTG Y + GC+ Y FP C HH P
Sbjct: 164 LSCCKSCGFGCNGG-DPLAAWRYWVKDGIVTGSNYTANNGCKPYPFPPCEHHSKKTHFDP 222
Query: 635 YPNCTGEFPTPKCKKACQAGYS-KTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAF 811
P+ +PTPKC+K C + Y+ KTY+EDK +G S+Y V + +AI +E++T+GP+E AF
Sbjct: 223 CPHDL--YPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAF 280
Query: 812 SVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
VY DF NY GVY H G + GGHA+K++GWG+++ PYW
Sbjct: 281 EVYEDFLNYDGGVYVHTGGKLGGGHAVKLIGWGIDDGIPYW 321
>sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precursor
Length = 329
Score = 228 bits (582), Expect = 1e-59
Identities = 111/215 (51%), Positives = 138/215 (64%)
Frame = +2
Query: 290 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 469
+P TFD+R QW +CKSI IRDQ+ CGSCWAFGA E I+DR CI + G Q P IS +DLL
Sbjct: 85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLL 144
Query: 470 TXXXXXXXXXXXXXSPSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIGPYPNCT 649
+ P +A R+W++ G+VTGG+Y GC+ Y C+ NC
Sbjct: 145 SCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDY-HGAGCKPYPIAPCTSG------NCP 197
Query: 650 GEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADF 829
E TP C +CQ+GYS YA+DK +G S+Y+V N +I EI NGPVEAAFSVY DF
Sbjct: 198 -ESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDF 256
Query: 830 PNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
YKSGVY+H G LGGHAIKI+GWG E+ +PYW
Sbjct: 257 YKYKSGVYKHTAGKYLGGHAIKIIGWGTESGSPYW 291
>sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 precursor (Cysteine
protease-related 5)
Length = 344
Score = 227 bits (579), Expect = 3e-59
Identities = 110/221 (49%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Frame = +2
Query: 290 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 469
+P FDAR QWP C SI IRDQS+CGSCWAF A EAI+DR CI SNG +S+EDLL
Sbjct: 82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLL 141
Query: 470 TXXXXXXXXXXXXXS--PSRAWRFWNTHGLVTGGEYGEHLGCQDYAFPKCSHHVIG-PYP 640
+ P +AW++W HGLVTGG Y GC+ Y+ C V G +P
Sbjct: 142 SCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWP 201
Query: 641 NCTGEF-PTPKCKKACQA--GYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAF 811
C + PTPKC +C + Y+ Y +DK +G ++Y+V + I EILTNGP+E AF
Sbjct: 202 ACPEDTEPTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVGKKVEQIQTEILTNGPIEVAF 261
Query: 812 SVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYW 934
+VY DF Y +GVY H G LGGHA+KILGWGV+N TPYW
Sbjct: 262 TVYEDFYQYTTGVYVHTAGASLGGHAVKILGWGVDNGTPYW 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,347,342
Number of Sequences: 369166
Number of extensions: 2415114
Number of successful extensions: 6960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6879
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)