Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_D03
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial... 120 7e-28
sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RAL... 120 7e-28
sp|Q63639|AL1A2_RAT Retinal dehydrogenase 2 (RalDH2) (RALDH... 120 7e-28
sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial... 120 7e-28
sp|P12762|ALDH2_HORSE Aldehyde dehydrogenase, mitochondrial... 120 1e-27
sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial p... 120 1e-27
sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial... 120 1e-27
sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial... 118 4e-27
sp|O94788|AL1A2_HUMAN Retinal dehydrogenase 2 (RalDH2) (RAL... 118 4e-27
sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 (RalDH1) (RAL... 117 6e-27
>sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 517
Score = 120 bits (302), Expect = 7e-28
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VWVNCYDV +PFGG+K SG
Sbjct: 431 EEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGS 490
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 491 GRELGEYGLQAYTEVKTVTVKVPQKNS 517
>sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 120 bits (302), Expect = 7e-28
Identities = 56/87 (64%), Positives = 71/87 (81%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
+EVIERANNSD+GL A VFT+DINKA+M++ A++AG+VW+NCY+ +PFGGFK SG
Sbjct: 413 DEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGN 472
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRE+G +GL Y EVK VT+ IPQKNS
Sbjct: 473 GREMGEFGLREYSEVKTVTVKIPQKNS 499
>sp|Q63639|AL1A2_RAT Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 120 bits (302), Expect = 7e-28
Identities = 56/87 (64%), Positives = 71/87 (81%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
+EVIERANNSD+GL A VFT+DINKA+M++ A++AG+VW+NCY+ +PFGGFK SG
Sbjct: 413 DEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGN 472
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRE+G +GL Y EVK VT+ IPQKNS
Sbjct: 473 GREMGEFGLREYSEVKTVTVKIPQKNS 499
>sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDH1)
(ALDH-E2)
Length = 500
Score = 120 bits (302), Expect = 7e-28
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VW+NCYDV +PFGG+K SG
Sbjct: 414 EEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGS 473
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VTI +PQKNS
Sbjct: 474 GRELGEYGLQAYTEVKTVTIKVPQKNS 500
>sp|P12762|ALDH2_HORSE Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDHI)
(ALDH-E2)
Length = 500
Score = 120 bits (301), Expect = 1e-27
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VW+NCYDV +PFGG+K SG
Sbjct: 414 EEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGN 473
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VTI +PQKNS
Sbjct: 474 GRELGEYGLQAYTEVKTVTIKVPQKNS 500
>sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDH1) (ALDH-E2)
Length = 519
Score = 120 bits (301), Expect = 1e-27
Identities = 56/87 (64%), Positives = 69/87 (79%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VW+NCYDV +PFGG+K SG
Sbjct: 433 EEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGS 492
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 493 GRELGEYGLQAYTEVKTVTVKVPQKNS 519
>sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 520
Score = 120 bits (300), Expect = 1e-27
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
EEV+ RANNS YGL A VFT D++KA ++QAL+AG+VWVNCYDV +PFGG+K SG
Sbjct: 434 EEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGS 493
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 494 GRELGEYGLQAYTEVKTVTVRVPQKNS 520
>sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(AHD-M1) (ALDHI) (ALDH-E2)
Length = 519
Score = 118 bits (296), Expect = 4e-27
Identities = 55/87 (63%), Positives = 69/87 (79%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
EEV+ RAN+S YGL A VFT D++KA ++QAL+AG+VW+NCYDV +PFGG+K SG
Sbjct: 433 EEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGS 492
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VT+ +PQKNS
Sbjct: 493 GRELGEYGLQAYTEVKTVTVKVPQKNS 519
>sp|O94788|AL1A2_HUMAN Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 118 bits (296), Expect = 4e-27
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
+EVIERANNSD+GL A VFT+DINKA+ ++ A++AG+VW+NCY+ +PFGGFK SG
Sbjct: 413 DEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGN 472
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRE+G +GL Y EVK VT+ IPQKNS
Sbjct: 473 GREMGEFGLREYSEVKTVTVKIPQKNS 499
>sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 (RalDH1) (RALDH 1) (Aldehyde dehydrogenase
family 1 member A1) (Aldehyde dehydrogenase, cytosolic)
(ALHDII) (ALDH-E1)
Length = 509
Score = 117 bits (294), Expect = 6e-27
Identities = 57/87 (65%), Positives = 65/87 (74%)
Frame = +3
Query: 3 EEVIERANNSDYGLGAGVFTSDINKAIMMTQALEAGSVWVNCYDVGLVTAPFGGFKQSGV 182
+EVI+RANN+ YGL A VFT DI+KA+ AL+AG+VWVNCY PFGGFK SG
Sbjct: 423 DEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGN 482
Query: 183 GRELGCYGLEPYIEVKGVTIAIPQKNS 263
GRELG YGL+ Y EVK VTI IPQKNS
Sbjct: 483 GRELGEYGLQEYTEVKTVTIKIPQKNS 509
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,878,654
Number of Sequences: 369166
Number of extensions: 523010
Number of successful extensions: 1265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)