Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_C17
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 54 9e-08
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 47 1e-05
sp|P93779|RL5_SOLME 60S ribosomal protein L5 41 7e-04
sp|P49227|RL5_ARATH 60S ribosomal protein L5 39 0.003
sp|P22451|RL5_CHICK 60S ribosomal protein L5 37 0.011
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 36 0.031
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 35 0.041
sp|P09895|RL5_RAT 60S ribosomal protein L5 35 0.041
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 35 0.041
sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B 35 0.041
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 54.3 bits (129), Expect = 9e-08
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTG-PKITLKKKMNLLQKRDRIKQIK 70
I+ G++ + +EE H AIREDP+P K KT + G K +KKM Q+RDR+KQ K
Sbjct: 227 IKHGVTADTVEEMYTKAHAAIREDPTPKK--KTDFAGKTKRWNRKKMTFSQRRDRVKQKK 284
Query: 69 DTYLAKLRAENQE 31
++ LRA+ QE
Sbjct: 285 ASF---LRAKQQE 294
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 47.0 bits (110), Expect = 1e-05
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTE-KTPYTGPKITLKKKMNLLQKRDRIKQIK 70
I+ G++ + IE HEAIR DPS K E K K K+K+ L ++++RIKQ K
Sbjct: 227 IKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 286
Query: 69 DTYLAKLRAE 40
+++ +L+A+
Sbjct: 287 ASFIKRLQAQ 296
>sp|P93779|RL5_SOLME 60S ribosomal protein L5
Length = 121
Score = 41.2 bits (95), Expect = 7e-04
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEK-TPYTGPKITLKK 115
I+A ++ +NIEE VH AIR DPSP K++K P T + LKK
Sbjct: 45 IKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKK 89
>sp|P49227|RL5_ARATH 60S ribosomal protein L5
Length = 301
Score = 39.3 bits (90), Expect = 0.003
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKT-PYTGPKITLKKKMNLLQKRDRIKQIK 70
I+ G+ E+IEE VH AIR +P+ KTEK+ P + LKK +K I+++K
Sbjct: 226 IKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVK 285
>sp|P22451|RL5_CHICK 60S ribosomal protein L5
Length = 297
Score = 37.4 bits (85), Expect = 0.011
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKD 67
I+ I+ + +EE H AIR++P K K ++ KM+L QK+DR+ Q K
Sbjct: 227 IKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVKKKRVN-STKMSLAQKKDRVAQKKA 285
Query: 66 TYL 58
++L
Sbjct: 286 SFL 288
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 35.8 bits (81), Expect = 0.031
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKD 67
I+ G++ + +E+ H IRE+P K K + + K++L QK+DR+ Q K
Sbjct: 227 IKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKEVKKKRWN-RAKLSLEQKKDRVAQKKA 285
Query: 66 TYL 58
++L
Sbjct: 286 SFL 288
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 35.4 bits (80), Expect = 0.041
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKD 67
I+ ++ + +EE H AIRE+P K K + + KM+L QK+DR+ Q K
Sbjct: 227 IKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWN-RPKMSLAQKKDRVAQKKA 285
Query: 66 TYL 58
++L
Sbjct: 286 SFL 288
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 35.4 bits (80), Expect = 0.041
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKD 67
I+ ++ + +EE H AIRE+P K K + + KM+L QK+DR+ Q K
Sbjct: 227 IKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKKKRWN-RPKMSLAQKKDRVAQKKA 285
Query: 66 TYL 58
++L
Sbjct: 286 SFL 288
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 35.4 bits (80), Expect = 0.041
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKD 67
I+ ++ + +EE H AIRE+P K K + + KM+L QK+DR+ Q K
Sbjct: 227 IKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKKKRWN-RPKMSLAQKKDRVAQKKA 285
Query: 66 TYL 58
++L
Sbjct: 286 SFL 288
>sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B
Length = 296
Score = 35.4 bits (80), Expect = 0.041
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -2
Query: 246 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIKD 67
I+ G++ + +E+ H IRE+P K K + + K++L QK+DR+ Q K
Sbjct: 227 IKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKEVKKKRWN-RAKLSLEQKKDRVAQKKA 285
Query: 66 TYL 58
++L
Sbjct: 286 SFL 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,811,790
Number of Sequences: 369166
Number of extensions: 333353
Number of successful extensions: 1370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)