Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_C07
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 110 1e-24
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 109 2e-24
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 109 2e-24
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 109 2e-24
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 109 2e-24
sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha)... 108 3e-24
sp|P25698|EF1A_SOYBN Elongation factor 1-alpha (EF-1-alpha) 108 5e-24
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 107 6e-24
sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha) 107 6e-24
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 107 8e-24
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 110 bits (274), Expect = 1e-24
Identities = 50/66 (75%), Positives = 60/66 (90%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QT
Sbjct: 373 AELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 109 bits (273), Expect = 2e-24
Identities = 51/65 (78%), Positives = 60/65 (92%)
Frame = +3
Query: 6 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 185
EL++KIDRRSGK +ED PK K+GDA +VR++PSKPMCVETF+EYPPLGRFAVRDM+QTV
Sbjct: 372 ELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTV 431
Query: 186 AVGVI 200
AVGVI
Sbjct: 432 AVGVI 436
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 109 bits (272), Expect = 2e-24
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QT
Sbjct: 373 AELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 109 bits (272), Expect = 2e-24
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QT
Sbjct: 373 AELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 109 bits (272), Expect = 2e-24
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QT
Sbjct: 373 AELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
>sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha) (Translation elongation
factor 1A) (Eukaryotic elongation factor 1A) (eEF1A)
Length = 458
Score = 108 bits (271), Expect = 3e-24
Identities = 53/65 (81%), Positives = 57/65 (87%)
Frame = +3
Query: 6 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 185
EL++K DRRSGK LED PK KSGDA LV+ VPSKPMCVE FSEYPPLGRFAVRDM+QTV
Sbjct: 372 ELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTV 431
Query: 186 AVGVI 200
AVGVI
Sbjct: 432 AVGVI 436
>sp|P25698|EF1A_SOYBN Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 108 bits (269), Expect = 5e-24
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AELM KIDRRSGK+LE PK K+GDAG V+++P+KPM VETFSEYPPLGRFAVRDM+QT
Sbjct: 361 AELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQT 420
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 421 VAVGVI 426
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 107 bits (268), Expect = 6e-24
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QT
Sbjct: 373 AELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
>sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 107 bits (268), Expect = 6e-24
Identities = 52/66 (78%), Positives = 57/66 (86%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS YPPLGRFAVRDM+QT
Sbjct: 373 AELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 107 bits (267), Expect = 8e-24
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3
Query: 3 AELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQT 182
AEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QT
Sbjct: 373 AELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
Query: 183 VAVGVI 200
VAVGVI
Sbjct: 433 VAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,046,409
Number of Sequences: 369166
Number of extensions: 478323
Number of successful extensions: 1416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)