Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_B06
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 67 1e-11
sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 65 4e-11
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 65 4e-11
sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A 64 1e-10
sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0 63 2e-10
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 62 4e-10
sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C 61 7e-10
sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B 61 7e-10
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 61 9e-10
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 61 9e-10
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 67.4 bits (163), Expect = 1e-11
Identities = 31/61 (50%), Positives = 46/61 (75%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F+ + VA+VSLA+N PTLASV H +AN ++ ++G++ VTD + KEAE IK ++ DP+K
Sbjct: 215 FLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSK 274
Query: 192 F 194
F
Sbjct: 275 F 275
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0
Length = 319
Score = 65.5 bits (158), Expect = 4e-11
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F VA++SLA++ PTLA+VPH+ N K V+ ++V TDY+ A+ IKEYLKDP+K
Sbjct: 218 FATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSK 277
Query: 192 F 194
F
Sbjct: 278 F 278
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0
Length = 320
Score = 65.5 bits (158), Expect = 4e-11
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F V ++SLA++ PTLA+ PH+ N K V+ ++V TDY+ EA+ +KEYLKDP+K
Sbjct: 218 FAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSK 277
Query: 192 F 194
F
Sbjct: 278 F 278
>sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A
Length = 317
Score = 63.5 bits (153), Expect = 1e-10
Identities = 26/61 (42%), Positives = 42/61 (68%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F + A+SLA++ PT+A+ PH+ N K V+ +++ T+Y+ +AE +KE+LKDPTK
Sbjct: 218 FAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTK 277
Query: 192 F 194
F
Sbjct: 278 F 278
>sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0
Length = 319
Score = 63.2 bits (152), Expect = 2e-10
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F VA+VSLA++ PT+A+ PH+ N K V+ ++V T+Y+ A+ IKEYLKDP+K
Sbjct: 218 FASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSK 277
Query: 192 F 194
F
Sbjct: 278 F 278
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 62.0 bits (149), Expect = 4e-10
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F + +AAV L++ PT+AS PH IAN K ++ ++ T+ KEA IKEY+KDP+K
Sbjct: 215 FQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSK 274
Query: 192 F 194
F
Sbjct: 275 F 275
>sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C
Length = 323
Score = 61.2 bits (147), Expect = 7e-10
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F V +++LA++ PTLA+ PH+ N K + ++V TDY +AE +KE+LKDP+K
Sbjct: 217 FASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSK 276
Query: 192 F 194
F
Sbjct: 277 F 277
>sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B
Length = 320
Score = 61.2 bits (147), Expect = 7e-10
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F V +++LA++ PTLA+ PH+ N K + ++V T+Y +AE +KEYLKDP+K
Sbjct: 217 FASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSK 276
Query: 192 F 194
F
Sbjct: 277 F 277
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F+E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+
Sbjct: 215 FLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSA 274
Query: 192 F 194
F
Sbjct: 275 F 275
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +3
Query: 12 FMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTK 191
F+E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+
Sbjct: 215 FLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSA 274
Query: 192 F 194
F
Sbjct: 275 F 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,511,944
Number of Sequences: 369166
Number of extensions: 372196
Number of successful extensions: 1095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)