Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A18
(643 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26648|TKB1_STRPU Tektin-B1 120 4e-27
sp|Q9UIF3|TEKT2_HUMAN Tektin-2 (Testicular tektin) (Tektin-... 110 3e-24
sp|Q922G7|TEKT2_MOUSE Tektin-2 (Testicular tektin) (Tektin-t) 104 2e-22
sp|Q6AYM2|TEKT2_RAT Tektin-2 (Testicular tektin) (Tektin-t) 103 5e-22
sp|Q9BXF9|TEKT3_HUMAN Tektin-3 64 3e-10
sp|Q6X6Z7|TEKT3_MOUSE Tektin-3 62 1e-09
sp|Q969V4|TEKT1_HUMAN Tektin-1 62 1e-09
sp|Q99JD2|TEKT1_RAT Tektin-1 61 3e-09
sp|Q9DAJ2|TEKT1_MOUSE Tektin-1 59 1e-08
sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle (Zipper... 38 0.025
>sp|Q26648|TKB1_STRPU Tektin-B1
Length = 400
Score = 120 bits (300), Expect = 4e-27
Identities = 71/170 (41%), Positives = 100/170 (58%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQT 182
Q Q TE+ALRKRIHE+++A E E+Q +I+ LE+A + K KL T
Sbjct: 230 QRQATEFALRKRIHEMKRAKDEDEWQKKNTEEEIAKQERNIRELEQAIKDKENPLKLAMT 289
Query: 183 RLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDN 362
RLENR RP +E CRD AQ GLV+EV ++ DS + LE++L +A NA D +K+L IN +
Sbjct: 290 RLENRTYRPNVELCRDNAQYGLVNEVHEIQDSIKALEKKLQDAHNARDACEKQLYRINKD 349
Query: 363 LNGKKHALLLDKMSLDYRLRLKTVPMTRTPCNMIPYGIMREKSVVVR*IL 512
L K ++L LD + R +L T P+T+T N+ + RE R +L
Sbjct: 350 LELKNNSLDLDNKCMQVREKLTTGPVTQTMNNLSTFKTDRELYTAQRSLL 399
>sp|Q9UIF3|TEKT2_HUMAN Tektin-2 (Testicular tektin) (Tektin-t) (Testicular tektin B1-like
protein) (Tektin-B1) (TEKTB1)
Length = 430
Score = 110 bits (275), Expect = 3e-24
Identities = 64/148 (43%), Positives = 90/148 (60%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQT 182
Q TE+A RKR+ E+E+ SEL++Q +DI+ LEE R K+ S KL+ T
Sbjct: 257 QRVATEFAFRKRLREMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRTKLLSLKLSHT 316
Query: 183 RLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDN 362
RLE R RP +E CRD AQ GL DEV QL + L+++LA A++ALD + K LA + +
Sbjct: 317 RLEARTYRPNVELCRDQAQYGLTDEVHQLEATIAALKQKLAQAQDALDALCKHLARLQAD 376
Query: 363 LNGKKHALLLDKMSLDYRLRLKTVPMTR 446
+ K +++LLD +D R +L TVP R
Sbjct: 377 IACKANSMLLDTKCMDTRRKL-TVPAER 403
>sp|Q922G7|TEKT2_MOUSE Tektin-2 (Testicular tektin) (Tektin-t)
Length = 430
Score = 104 bits (260), Expect = 2e-22
Identities = 61/145 (42%), Positives = 84/145 (57%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQT 182
Q TE+ RKR+ E+E SEL++Q DI+ LEE R K+ + KL T
Sbjct: 257 QRVATEFTFRKRLREMESFYSELKWQEKNTLEEIAELQGDIRRLEEDLRRKMMNLKLAHT 316
Query: 183 RLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDN 362
RLE+R R +E CRD Q GL+DEV QL + T++++LA +NALD + K LA I +
Sbjct: 317 RLESRTYRSNVELCRDQTQYGLIDEVHQLEATINTMKQKLAQTQNALDALFKHLARIQAD 376
Query: 363 LNGKKHALLLDKMSLDYRLRLKTVP 437
+ K + LLLD +D R +L TVP
Sbjct: 377 IACKTNTLLLDTKCMDTRRKL-TVP 400
>sp|Q6AYM2|TEKT2_RAT Tektin-2 (Testicular tektin) (Tektin-t)
Length = 430
Score = 103 bits (256), Expect = 5e-22
Identities = 59/145 (40%), Positives = 84/145 (57%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQT 182
Q TE+ RKR+ E+E SEL++Q DI+ LEE R K+ + KL T
Sbjct: 257 QRVATEFTFRKRLREMESLYSELKWQEKNTLEEIAELQADIRRLEEDLRRKMMNLKLAHT 316
Query: 183 RLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDN 362
RLE+R RP +E CRD Q GL+DEV QL + ++++LA ++ALD + K LA I +
Sbjct: 317 RLESRTYRPNVELCRDQTQYGLIDEVHQLEATISIMKQKLAQTQDALDALFKHLARIQAD 376
Query: 363 LNGKKHALLLDKMSLDYRLRLKTVP 437
+ K + +LLD +D R +L TVP
Sbjct: 377 IACKTNTMLLDTKCMDIRRKL-TVP 400
>sp|Q9BXF9|TEKT3_HUMAN Tektin-3
Length = 490
Score = 63.9 bits (154), Expect = 3e-10
Identities = 38/132 (28%), Positives = 69/132 (52%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQT 182
Q + + RI E A ++++ I+++++A + K K+ QT
Sbjct: 339 QFNKVNLSFTNRIAETADAKNKIQTHLAKTLQEIFQTEMTIESIKKAIKDKTAFLKVAQT 398
Query: 183 RLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDN 362
RL+ R RP +E CRD AQ LV+EV ++ D+ +TL++RL +A + L + A + +
Sbjct: 399 RLDERTRRPNIELCRDMAQLRLVNEVHEVDDTIQTLQQRLRDAEDTLQSLVHIKATLEYD 458
Query: 363 LNGKKHALLLDK 398
L K ++L +D+
Sbjct: 459 LAVKANSLYIDQ 470
>sp|Q6X6Z7|TEKT3_MOUSE Tektin-3
Length = 490
Score = 62.4 bits (150), Expect = 1e-09
Identities = 37/132 (28%), Positives = 67/132 (50%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQT 182
Q + A RI E A +++ I+++++A + K K+ QT
Sbjct: 339 QFNKVNLAFTNRIAETVDAKNKIHTHLTKTLQEIFQIEMTIESIKKAIKEKSAFLKVAQT 398
Query: 183 RLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDN 362
RL+ R RP +E CRD AQ LV+EV ++ ++ +TL++RL ++ + L + A + +
Sbjct: 399 RLDERTRRPNVELCRDMAQLRLVNEVYEVDETIQTLQQRLRDSEDTLQSLAHTKATLEHD 458
Query: 363 LNGKKHALLLDK 398
L K + L +D+
Sbjct: 459 LAVKANTLYIDQ 470
>sp|Q969V4|TEKT1_HUMAN Tektin-1
Length = 418
Score = 62.4 bits (150), Expect = 1e-09
Identities = 36/107 (33%), Positives = 64/107 (59%)
Frame = +3
Query: 120 DIKALEEAARAKIPSAKLTQTRLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEER 299
+I ALE+A + AK+ TRLE R RP +E CRD AQ L+ EV ++ + L+E
Sbjct: 295 NITALEKAILDQEGPAKVAHTRLETRTHRPNVELCRDVAQYRLMKEVQEITHNVARLKET 354
Query: 300 LANARNALDGVDKKLAEINDNLNGKKHALLLDKMSLDYRLRLKTVPM 440
LA A+ L G+ ++ + + + K++ + +D++ L ++R K++P+
Sbjct: 355 LAQAQAELKGLHRRQLALQEEIQVKENTIYIDEV-LCMQMR-KSIPL 399
>sp|Q99JD2|TEKT1_RAT Tektin-1
Length = 418
Score = 60.8 bits (146), Expect = 3e-09
Identities = 32/94 (34%), Positives = 54/94 (57%)
Frame = +3
Query: 120 DIKALEEAARAKIPSAKLTQTRLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEER 299
+I+ LE A + AK+ TRLENR RP +E CRD AQ L+ EV ++ + LEE
Sbjct: 295 NIEVLENAITQQEGPAKVAHTRLENRTYRPNVELCRDVAQYRLIREVQEIKHNVARLEET 354
Query: 300 LANARNALDGVDKKLAEINDNLNGKKHALLLDKM 401
LA A+ L + ++ + + + K++ + +D++
Sbjct: 355 LAQAQIQLKALFRRQLALQEEIQVKENTIYIDQV 388
>sp|Q9DAJ2|TEKT1_MOUSE Tektin-1
Length = 418
Score = 58.9 bits (141), Expect = 1e-08
Identities = 30/94 (31%), Positives = 53/94 (56%)
Frame = +3
Query: 120 DIKALEEAARAKIPSAKLTQTRLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEER 299
+I ALE A + AK+ TRLE R RP +E CRD AQ L+ E+ ++ + L+E
Sbjct: 295 NIMALENAITQQEGPAKVAHTRLETRTHRPNVELCRDIAQYRLIKEIQEINHNVARLKET 354
Query: 300 LANARNALDGVDKKLAEINDNLNGKKHALLLDKM 401
LA A+ L + ++ + + + K++ + +D++
Sbjct: 355 LAQAQTQLKALYRRQLALQEEIQVKENTIYIDQV 388
>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle (Zipper protein) (Myosin II)
(Non-muscle MHC)
Length = 2057
Score = 37.7 bits (86), Expect = 0.025
Identities = 27/113 (23%), Positives = 54/113 (47%)
Frame = +3
Query: 27 LRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQTRLENRLER 206
L+ ++ E+E+A SEL+ + + ++ E A A + SA +++L E
Sbjct: 1348 LQVKLAEIERARSELQEKCTKLQQEAENITNQLEEAELKASAAVKSASNMESQL---TEA 1404
Query: 207 PRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEINDNL 365
++ + + GL ++ Q+ KE L+E+L A ++KLAE+ +
Sbjct: 1405 QQLLEEETRQKLGLSSKLRQIESEKEALQEQLEEDDEAKRNYERKLAEVTTQM 1457
Score = 32.3 bits (72), Expect = 1.1
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +3
Query: 3 QSQRTEYALRKRIHELEQAVSELEYQ--XXXXXXXXXXXXDDIKALEEAARAKIPSAKLT 176
Q+ R + + +K ELE A ELE Q D I A E+A +I + T
Sbjct: 1498 QNDRLDKSKKKIQSELEDATIELEAQRTKVLELEKKQKNFDKILAEEKAISEQIAQERDT 1557
Query: 177 QTRLENRLERPRMEQCRDAAQEGLVDEVSQLADSKETLEERLANARNALDGVDKKLAEI 353
R E + R+ + D++ L + ++TL+ L + N DK + E+
Sbjct: 1558 AEREAREKETKVLSVSREL--DEAFDKIEDLENKRKTLQNELDDLANTQGTADKNVHEL 1614
Score = 32.0 bits (71), Expect = 1.4
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Frame = +3
Query: 15 TEYALRKRIHELEQAVSELEYQXXXXXXXXXXXXDDIKALEEAARAKIPSAKLTQTRLEN 194
T+ K +HELE+A LE Q DD++ E+A + RLE
Sbjct: 1603 TQGTADKNVHELEKAKRALESQLAELKAQNEELEDDLQLTEDA-----------KLRLEV 1651
Query: 195 RLERPRMEQCRD--AAQEGLVDE----VSQLADSKETLEERLANARNALDGVDKKL 344
++ R + RD A +EG ++ V QL D + L+E R A KKL
Sbjct: 1652 NMQALRSQFERDLLAKEEGAEEKRRGLVKQLRDLETELDEE-RKQRTAAVASKKKL 1706
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,055,873
Number of Sequences: 369166
Number of extensions: 933408
Number of successful extensions: 3076
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3065
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)