Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A15-2
(226 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6HX62|Y3032_BACAN Putative adenine deaminase BA3032/GBA... 28 8.4
sp|Q830D0|SYT_ENTFA Threonyl-tRNA synthetase (Threonine--tR... 28 8.4
>sp|Q6HX62|Y3032_BACAN Putative adenine deaminase BA3032/GBAA3032/BAS2818 (Adenase)
(Adenine aminase)
Length = 584
Score = 27.7 bits (60), Expect = 8.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 132 HKTTKNVTYVNKYFSHWVK 188
HK KN TY+N Y W++
Sbjct: 27 HKLLKNATYLNSYIREWMQ 45
>sp|Q830D0|SYT_ENTFA Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 645
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 115 RPRAEFGTRETITLPDHHDHTGTLTHS 35
RP E G+ E +T PDH D G L HS
Sbjct: 50 RPIVEDGSLEIVT-PDHEDALGILRHS 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,089,838
Number of Sequences: 369166
Number of extensions: 395342
Number of successful extensions: 787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)