Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A12
(392 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62083|RS7_RAT 40S ribosomal protein S7 (S8) >gi|4906583... 163 1e-40
sp|P50894|RS7_FUGRU 40S ribosomal protein S7 163 1e-40
sp|P62084|RS7_BRARE 40S ribosomal protein S7 162 2e-40
sp|P02362|RS7_XENLA 40S ribosomal protein S7 (S8) 162 3e-40
sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 162 3e-40
sp|Q9VA91|RS7_DROME 40S ribosomal protein S7 160 1e-39
sp|P62085|RS7_DROYA 40S ribosomal protein S7 158 3e-39
sp|Q9NB21|RS7_CULQU 40S ribosomal protein S7 152 2e-37
sp|Q962S0|RS7_SPOFR 40S ribosomal protein S7 151 4e-37
sp|P48155|RS7_MANSE 40S ribosomal protein S7 151 5e-37
>sp|P62083|RS7_RAT 40S ribosomal protein S7 (S8)
sp|P62082|RS7_MOUSE 40S ribosomal protein S7
sp|P62081|RS7_HUMAN 40S ribosomal protein S7
sp|Q5RT64|RS7_FELCA 40S ribosomal protein S7
Length = 194
Score = 163 bits (413), Expect = 1e-40
Identities = 78/115 (67%), Positives = 94/115 (81%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD IL DLVFP+EI
Sbjct: 80 VRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEI 139
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPEWNL 33
+GKR R+ +DG RLIK HL+K+QQ N+EHK+ET + +YK+LTGKDV FEFPE+ L
Sbjct: 140 VGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL 194
>sp|P50894|RS7_FUGRU 40S ribosomal protein S7
Length = 194
Score = 163 bits (413), Expect = 1e-40
Identities = 78/115 (67%), Positives = 94/115 (81%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV A R ILPKP+R S++ KQKRP SRTLTSVHD IL DLVFP+EI
Sbjct: 80 VRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEI 139
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPEWNL 33
+GKR R+ +D RLIK HL+K+QQ N+EHK+ET + +YK+LTGKDV FEFPE+ L
Sbjct: 140 VGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFPEFQL 194
>sp|P62084|RS7_BRARE 40S ribosomal protein S7
Length = 194
Score = 162 bits (411), Expect = 2e-40
Identities = 78/115 (67%), Positives = 93/115 (80%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD IL DLVFP+EI
Sbjct: 80 VRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEI 139
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPEWNL 33
+GKR R+ +D RLIK HL+K+QQ N+EHK+ET A +YK+LTGKDV FEFPE+ L
Sbjct: 140 VGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFPEFQL 194
>sp|P02362|RS7_XENLA 40S ribosomal protein S7 (S8)
Length = 194
Score = 162 bits (409), Expect = 3e-40
Identities = 76/115 (66%), Positives = 94/115 (81%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD IL DLV+P+EI
Sbjct: 80 VRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEI 139
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPEWNL 33
+G+R R+ +DG RLIK HL+K+QQ N+EHK+ET + +YK+LTGKDV FEFPE+ L
Sbjct: 140 VGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFPEFQL 194
>sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7
Length = 194
Score = 162 bits (409), Expect = 3e-40
Identities = 77/115 (66%), Positives = 93/115 (80%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD IL DLV+P+EI
Sbjct: 80 VRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEI 139
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPEWNL 33
+GKR R+ +D RLIK HL+K+QQ N+EHK+ET A +YK+LTGKDV FEFPE+ L
Sbjct: 140 VGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFPEFQL 194
>sp|Q9VA91|RS7_DROME 40S ribosomal protein S7
Length = 194
Score = 160 bits (404), Expect = 1e-39
Identities = 74/112 (66%), Positives = 94/112 (83%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV + A R ILPKP+R ++N LKQKRP SRTLT+V+D IL DLVFPAEI
Sbjct: 78 VRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEI 137
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 42
+GKR R+ +DG +L+K HL+K+QQ IEHK++T S+YK+LTG+DV FEFP+
Sbjct: 138 VGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPD 189
>sp|P62085|RS7_DROYA 40S ribosomal protein S7
Length = 194
Score = 158 bits (400), Expect = 3e-39
Identities = 73/112 (65%), Positives = 93/112 (83%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV + R ILPKP+R ++N LKQKRP SRTLT+V+D IL DLVFPAEI
Sbjct: 78 VRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEI 137
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 42
+GKR R+ +DG +L+K HL+K+QQ IEHK++T S+YK+LTG+DV FEFP+
Sbjct: 138 VGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPD 189
>sp|Q9NB21|RS7_CULQU 40S ribosomal protein S7
Length = 192
Score = 152 bits (385), Expect = 2e-37
Identities = 72/112 (64%), Positives = 89/112 (79%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV R ILPKP R ++ KQKRP SRTLT+V+D IL DLVFPAE+
Sbjct: 78 VRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEV 137
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 42
+GKR R+ +DG +LIK HL+K+QQ IEHK++T S+YK+LTG+DV FEFPE
Sbjct: 138 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPE 189
>sp|Q962S0|RS7_SPOFR 40S ribosomal protein S7
Length = 190
Score = 151 bits (382), Expect = 4e-37
Identities = 74/112 (66%), Positives = 89/112 (79%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV R ILPKPS ++ KQKRP SRTLTSV+D IL DLVFPAEI
Sbjct: 76 VRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEI 135
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 42
+GKR RI +DG +LIK HL+K+QQ IEHK++T S+YK+LTG++V FEFPE
Sbjct: 136 VGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 187
>sp|P48155|RS7_MANSE 40S ribosomal protein S7
Length = 190
Score = 151 bits (381), Expect = 5e-37
Identities = 73/112 (65%), Positives = 89/112 (79%)
Frame = -1
Query: 377 IRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFPAEI 198
+RELEKKFSGKHV R ILPKPS ++ KQKRP SRTLTSV+D IL DLVFPAEI
Sbjct: 76 VRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEI 135
Query: 197 IGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 42
+GKR R+ +DG +LIK HL+K+QQ IEHK++T S+YK+LTG++V FEFPE
Sbjct: 136 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 187
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,613,032
Number of Sequences: 369166
Number of extensions: 848719
Number of successful extensions: 2596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2587
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)