Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A11
(614 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 63 5e-10
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 48 2e-05
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 48 2e-05
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 48 2e-05
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 48 2e-05
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 42 0.001
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 33 0.44
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 33 0.58
sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 32 1.3
sp|Q09911|YAJE_SCHPO Hypothetical protein C30D11.14c in chr... 30 4.9
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 63.2 bits (152), Expect = 5e-10
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 10/98 (10%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRG----IDNQKKNVISNADQC------EKLHLQI 153
F KLLGPG ST+K +Q++T TK++I G D K+ + N+ E+LH++I
Sbjct: 90 FLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEI 149
Query: 154 DSLGTPAEAYYKLSHAVAEVQKCLTFNLPLSYPTVDPN 267
S+ +PAEA+ ++++A+ E++K +T P DPN
Sbjct: 150 ISIASPAEAHARMAYALTEIKKYIT-------PEEDPN 180
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRG----IDNQKKNVISNADQCEKLHLQID----- 156
F K+LGP +T+K +QE+T K+++ G D K+ + + HL +D
Sbjct: 172 FVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFI 231
Query: 157 -SLGTPAEAYYKLSHAVAEVQKCL 225
G P EAY ++HA+ EV+K L
Sbjct: 232 EVFGPPCEAYALMAHAMEEVKKFL 255
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRG----IDNQKKNVISNADQCEKLHLQID----- 156
F K+LGP +T+K +QE+T K+++ G D K+ + + HL +D
Sbjct: 172 FVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFI 231
Query: 157 -SLGTPAEAYYKLSHAVAEVQKCL 225
G P EAY ++HA+ EV+K L
Sbjct: 232 EVFGPPCEAYALMAHAMEEVKKFL 255
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRG----IDNQKKNVISNADQCEKLHLQID----- 156
F K+LGP +T+K +QE+T K+++ G D K+ + + HL +D
Sbjct: 172 FVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFI 231
Query: 157 -SLGTPAEAYYKLSHAVAEVQKCL 225
G P EAY ++HA+ EV+K L
Sbjct: 232 EVFGPPCEAYALMAHAMEEVKKFL 255
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRG----IDNQKKNVISNADQCEKLHLQID----- 156
F K+LGP +T+K +QE+T K+++ G D K+ + + HL +D
Sbjct: 155 FVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFI 214
Query: 157 -SLGTPAEAYYKLSHAVAEVQKCL 225
G P EAY ++HA+ EV+K L
Sbjct: 215 EVFGPPCEAYALMAHAMEEVKKFL 238
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRGIDNQKKNVISNADQ--------CEKLHLQIDS 159
F ++LGP T K ++++T K+ +RG + + +A++ + LH+ I
Sbjct: 153 FVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITV 212
Query: 160 LGTPAEAYYKLSHAVAEVQKCL 225
T A KL+ AVAEVQK L
Sbjct: 213 EDTENRATVKLAQAVAEVQKLL 234
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 33.5 bits (75), Expect = 0.44
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRGIDNQKKNVISNAD 126
F L+GP +TLK+I+++ N K+ IRG + K+ + D
Sbjct: 152 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKD 192
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 33.1 bits (74), Expect = 0.58
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRGIDNQKKNVISNADQC--------EKLHLQIDS 159
F ++LGP T K +++ T K+ +RG + + +A + + LH+ +
Sbjct: 221 FVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQC 280
Query: 160 LGTPAEAYYKLSHAVAEVQKCL 225
T + KL A+ +V+K L
Sbjct: 281 EDTENRVHIKLQAALEQVKKLL 302
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian
branch point binding protein mBBP) (BBP) (CW17)
Length = 653
Score = 32.0 bits (71), Expect = 1.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 4 FCWKLLGPGASTLKSIQEQTNTKMTIRGIDNQKKNVISNAD 126
F L+GP +TLK+I+++ N K+ IRG + ++ + D
Sbjct: 152 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEGKVGRKD 192
>sp|Q09911|YAJE_SCHPO Hypothetical protein C30D11.14c in chromosome I
Length = 534
Score = 30.0 bits (66), Expect = 4.9
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 16 LLGPGASTLKSIQEQTNTKMTIRGIDNQKKNVISNADQCEKLHLQIDS 159
++GP + +K IQ++T T++ I+G + +N + E +HL I S
Sbjct: 309 IVGPQGAYVKHIQQETRTRVQIKGQGSAFIEPSTNRESDEPIHLCIMS 356
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,967,723
Number of Sequences: 369166
Number of extensions: 1423092
Number of successful extensions: 3936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3928
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)