Planarian EST Database


Dr_sW_017_A09

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_017_A09
         (778 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21856|GDIA_BOVIN  Rab GDP dissociation inhibitor alpha (...   187   2e-47
sp|P50396|GDIA_MOUSE  Rab GDP dissociation inhibitor alpha (...   187   3e-47
sp|P50398|GDIA_RAT  Rab GDP dissociation inhibitor alpha (Ra...   187   3e-47
sp|O97555|GDIA_CANFA  Rab GDP dissociation inhibitor alpha (...   187   3e-47
sp|P60028|GDIA_PANTR  Rab GDP dissociation inhibitor alpha (...   187   4e-47
sp|Q7YQM0|GDIA_PONPY  Rab GDP dissociation inhibitor alpha (...   187   4e-47
sp|Q8HXX7|GDIA_MACFA  Rab GDP dissociation inhibitor alpha (...   186   6e-47
sp|P50399|GDIB_RAT  Rab GDP dissociation inhibitor beta (Rab...   185   1e-46
sp|Q61598|GDIB_MOUSE  Rab GDP dissociation inhibitor beta (R...   185   1e-46
sp|P50395|GDIB_HUMAN  Rab GDP dissociation inhibitor beta (R...   182   7e-46
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
           GDI)
          Length = 447

 Score =  187 bits (476), Expect = 2e-47
 Identities = 90/143 (62%), Positives = 108/143 (75%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET +P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  GS FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  187 bits (475), Expect = 3e-47
 Identities = 90/143 (62%), Positives = 107/143 (74%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET  P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  GS FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  187 bits (475), Expect = 3e-47
 Identities = 90/143 (62%), Positives = 107/143 (74%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET  P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  GS FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  187 bits (475), Expect = 3e-47
 Identities = 90/143 (62%), Positives = 107/143 (74%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET  P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  GS FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1)
 sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
           (Oligophrenin-2)
          Length = 447

 Score =  187 bits (474), Expect = 4e-47
 Identities = 89/143 (62%), Positives = 108/143 (75%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET +P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  G+ FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  187 bits (474), Expect = 4e-47
 Identities = 89/143 (62%), Positives = 108/143 (75%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET +P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  G+ FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
           diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  186 bits (472), Expect = 6e-47
 Identities = 89/143 (62%), Positives = 107/143 (74%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +SY H+VA+   +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVET +P +E++P L LL  I+Q F   SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR  G  FDF  ++ K
Sbjct: 415 NDIKDIYKRMAGMAFDFENMKRK 437
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
           diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
          Length = 445

 Score =  185 bits (469), Expect = 1e-46
 Identities = 87/143 (60%), Positives = 111/143 (77%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +S+ H+VA+   +IA+V+
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVETK P +E++P L LL  IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR TGSEFDF +++ K
Sbjct: 415 DDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
           diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
          Length = 445

 Score =  185 bits (469), Expect = 1e-46
 Identities = 87/143 (60%), Positives = 111/143 (77%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +S+ H+VA+   +IA+V+
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVETK P +E++P L LL  IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ D+YKR TGSEFDF +++ K
Sbjct: 415 DDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
           diphosphate dissociation inhibitor 2) (GDI-2)
          Length = 445

 Score =  182 bits (463), Expect = 7e-46
 Identities = 87/143 (60%), Positives = 110/143 (76%)
 Frame = +2

Query: 2   GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
           G VIR ICIL+HP+ NTN A S QIIIPQNQVNR  DIYVC +S+ H+VA+   +IA+V+
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354

Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
           TTVETK P +E++P L LL  IEQ F + SDL  P D G ES++F+S +YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTC 414

Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
            D+ ++YKR TGSEFDF +++ K
Sbjct: 415 DDIKNIYKRMTGSEFDFEEMKRK 437
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,935,183
Number of Sequences: 369166
Number of extensions: 1735217
Number of successful extensions: 4793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)