Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A09
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 187 2e-47
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 187 3e-47
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 187 3e-47
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 187 3e-47
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 187 4e-47
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 187 4e-47
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 186 6e-47
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 185 1e-46
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 185 1e-46
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 182 7e-46
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 187 bits (476), Expect = 2e-47
Identities = 90/143 (62%), Positives = 108/143 (75%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR GS FDF ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 187 bits (475), Expect = 3e-47
Identities = 90/143 (62%), Positives = 107/143 (74%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR GS FDF ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 187 bits (475), Expect = 3e-47
Identities = 90/143 (62%), Positives = 107/143 (74%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR GS FDF ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 187 bits (475), Expect = 3e-47
Identities = 90/143 (62%), Positives = 107/143 (74%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR GS FDF ++ K
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 187 bits (474), Expect = 4e-47
Identities = 89/143 (62%), Positives = 108/143 (75%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR G+ FDF ++ K
Sbjct: 415 NDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 187 bits (474), Expect = 4e-47
Identities = 89/143 (62%), Positives = 108/143 (75%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR G+ FDF ++ K
Sbjct: 415 NDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 186 bits (472), Expect = 6e-47
Identities = 89/143 (62%), Positives = 107/143 (74%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +SY H+VA+ +IA+ +
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVET +P +E++P L LL I+Q F SDLYEPIDDG ES+VF S SYDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR G FDF ++ K
Sbjct: 415 NDIKDIYKRMAGMAFDFENMKRK 437
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 185 bits (469), Expect = 1e-46
Identities = 87/143 (60%), Positives = 111/143 (77%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVETK P +E++P L LL IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR TGSEFDF +++ K
Sbjct: 415 DDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 185 bits (469), Expect = 1e-46
Identities = 87/143 (60%), Positives = 111/143 (77%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVETK P +E++P L LL IEQ F + SDL+ P D G +S++F+S +YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ D+YKR TGSEFDF +++ K
Sbjct: 415 DDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 182 bits (463), Expect = 7e-46
Identities = 87/143 (60%), Positives = 110/143 (76%)
Frame = +2
Query: 2 GSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHDIYVCCVSYTHSVASNPNFIALVA 181
G VIR ICIL+HP+ NTN A S QIIIPQNQVNR DIYVC +S+ H+VA+ +IA+V+
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354
Query: 182 TTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPIDDGVESRVFVSTSYDATTHFETTC 361
TTVETK P +E++P L LL IEQ F + SDL P D G ES++F+S +YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTC 414
Query: 362 RDVLDVYKRYTGSEFDFGKVQSK 430
D+ ++YKR TGSEFDF +++ K
Sbjct: 415 DDIKNIYKRMTGSEFDFEEMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,935,183
Number of Sequences: 369166
Number of extensions: 1735217
Number of successful extensions: 4793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)