Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_P23
(555 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 124 2e-28
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 122 5e-28
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 122 6e-28
sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52... 49 6e-06
sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Tri... 43 6e-04
sp|Q9WVS6|PRKN2_MOUSE Parkin (Ubiquitin E3 ligase PRKN) 43 6e-04
sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Tri... 43 6e-04
sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2) 43 6e-04
sp|Q9JK66|PRKN2_RAT Parkin (Ubiquitin E3 ligase PRKN) 43 6e-04
sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin... 42 8e-04
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 124 bits (310), Expect = 2e-28
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Frame = +3
Query: 6 ILNDQEYEIFNDKSLLLARSKLSDIYHCKKPDCKYFGICDDSYLKHFICPICNSFNCIKY 185
+L+ ++Y+ F D + +A ++ + YHCK PDC+ + +D + F CP+C NC+
Sbjct: 332 LLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDD-VNEFTCPVCTRVNCLLC 390
Query: 186 NAIHGGQTCEDFQDS---RNRPNTLYVXXXXXXXXXXXXXXCMKCPTCGCIIVKTGGCNW 356
AIH C ++QD R R + M CP C ++ K GC+W
Sbjct: 391 KAIHERMNCREYQDDLAHRARNDVAAQQTTEMLRVMLQQGEAMYCPQCRIVVQKKDGCDW 450
Query: 357 VKCPQCKLELCWVLKTPRWAPKRNRDTSGVCICGVNKKPCSP 482
++C C E+CWV K PRW P DTSG C C VN PC P
Sbjct: 451 IRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHP 492
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 122 bits (307), Expect = 5e-28
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Frame = +3
Query: 6 ILNDQEYEIFNDKSLLLARSKLSDIYHCKKPDCKYFGICDDSYLKHFICPICNSFNCIKY 185
+L ++Y+ F D + +A ++ + YHCK PDCK + +D + F CP+C NC+
Sbjct: 334 LLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD-VNEFTCPVCFHVNCLLC 392
Query: 186 NAIHGGQTCEDFQDS---RNRPNTLYVXXXXXXXXXXXXXXCMKCPTCGCIIVKTGGCNW 356
AIH C+++Q+ R + + M+CP C ++ K GC+W
Sbjct: 393 KAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDW 452
Query: 357 VKCPQCKLELCWVLKTPRWAPKRNRDTSGVCICGVNKKPCSP 482
++C C E+CWV K PRW P DTSG C C VN PC P
Sbjct: 453 IRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHP 494
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 122 bits (306), Expect = 6e-28
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Frame = +3
Query: 6 ILNDQEYEIFNDKSLLLARSKLSDIYHCKKPDCKYFGICDDSYLKHFICPICNSFNCIKY 185
+L+ ++Y+ F D + +A ++ + YHCK PDC+ + +D + F CP+C NC+
Sbjct: 332 LLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDD-VNEFTCPVCTRVNCLLC 390
Query: 186 NAIHGGQTCEDFQDS---RNRPNTLYVXXXXXXXXXXXXXXCMKCPTCGCIIVKTGGCNW 356
AIH C ++QD R + + M CP C ++ K GC+W
Sbjct: 391 KAIHEHMNCREYQDDLALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCDW 450
Query: 357 VKCPQCKLELCWVLKTPRWAPKRNRDTSGVCICGVNKKPCSP 482
++C C E+CWV K PRW P DTSG C C VN PC P
Sbjct: 451 IRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHP 492
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
Length = 551
Score = 49.3 bits (116), Expect = 6e-06
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +3
Query: 306 KCPTCGCIIVKTGGCNWVKCPQCKLELCWVLKTPRWAP 419
+CP C I K GGCN + C CK E CW+ + P WAP
Sbjct: 340 ECPKCSVNIEKNGGCNHMVCSSCKYEFCWICEGP-WAP 376
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
Length = 493
Score = 42.7 bits (99), Expect = 6e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 309 CPTCGCIIVKTGGCNWVKCPQCKLELCWV 395
CP C I K GGCN ++C +CK + CW+
Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWM 325
>sp|Q9WVS6|PRKN2_MOUSE Parkin (Ubiquitin E3 ligase PRKN)
Length = 464
Score = 42.7 bits (99), Expect = 6e-04
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 309 CPTCGCIIVKTGGCNWVKC--PQCKLELCW 392
CP C I K GGC +KC PQCKLE CW
Sbjct: 417 CPRCNVPIEKNGGCMHMKCPQPQCKLEWCW 446
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
(UbcM4-interacting protein 48)
Length = 492
Score = 42.7 bits (99), Expect = 6e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 309 CPTCGCIIVKTGGCNWVKCPQCKLELCWV 395
CP C I K GGCN ++C +CK + CW+
Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWM 324
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
Length = 509
Score = 42.7 bits (99), Expect = 6e-04
Identities = 25/107 (23%), Positives = 39/107 (36%)
Frame = +3
Query: 75 DIYHCKKPDCKYFGICDDSYLKHFICPICNSFNCIKYNAIHGGQTCEDFQDSRNRPNTLY 254
++ C P+C+ + K IC C++ C + + T D + L
Sbjct: 238 ELRFCPGPNCQIIVQSSEISAKRAICKACHTGFCFRCGMDYHAPT-----DCQVIKKWLT 292
Query: 255 VXXXXXXXXXXXXXXCMKCPTCGCIIVKTGGCNWVKCPQCKLELCWV 395
CP C I K GGCN ++C CK + CW+
Sbjct: 293 KCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCFNCKHDFCWM 339
>sp|Q9JK66|PRKN2_RAT Parkin (Ubiquitin E3 ligase PRKN)
Length = 465
Score = 42.7 bits (99), Expect = 6e-04
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 309 CPTCGCIIVKTGGCNWVKC--PQCKLELCW 392
CP C I K GGC +KC PQCKLE CW
Sbjct: 418 CPRCNVPIEKNGGCMHMKCPQPQCKLEWCW 447
>sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin conjugating enzyme 7
interacting protein 1) (Zinc finger protein inhibiting
NF-kappa-B)
Length = 866
Score = 42.4 bits (98), Expect = 8e-04
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Frame = +3
Query: 54 LARSKLSDIYHCKKPDCKYFGICDDSYLKHFICPI--CNSFNCIKYNAI---HGGQTCED 218
+A + ++ C P C + + D S +K F CP C C K + H G TCE+
Sbjct: 594 VAAAYADELVRC--PSCSFPALLD-SDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEE 650
Query: 219 FQDSRNRPNTLYVXXXXXXXXXXXXXXCMKCPTCGCIIVKTGGCNWVKCPQCKLELCWVL 398
+ + + KC CG ++K+ GCN + C +C ++C++
Sbjct: 651 LAEKDD------IKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSC-RCGAQMCYLC 703
Query: 399 K 401
+
Sbjct: 704 R 704
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,732,210
Number of Sequences: 369166
Number of extensions: 1294849
Number of successful extensions: 3146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3126
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)