Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_P16
(641 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08730|GLYG_RAT Glycogenin-1 178 9e-45
sp|P13280|GLYG_RABIT Glycogenin-1 176 5e-44
sp|Q9R062|GLYG_MOUSE Glycogenin-1 175 8e-44
sp|P46976|GLYG_HUMAN Glycogenin-1 172 9e-43
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 147 3e-35
sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1 74 3e-13
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 72 1e-12
sp|P27128|RFAI_ECOLI Lipopolysaccharide 1,3-galactosyltrans... 33 0.48
sp|Q9NYG2|ZDHC3_HUMAN Palmitoyltransferase ZDHHC3 (Zinc fin... 32 1.8
sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr... 32 1.8
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 178 bits (452), Expect = 9e-45
Identities = 94/204 (46%), Positives = 121/204 (59%), Gaps = 14/204 (6%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYN 181
PDCFNSGVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI HLPFVYN
Sbjct: 129 PDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYN 188
Query: 182 CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQL 355
S + YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L L
Sbjct: 189 LSSLSIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVKCESQDPIVSHPEFLNL 248
Query: 356 WWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSFVP-HEGKFSPKSHQQAW 499
WW TF PLL M V G ++ L P + S + ++ W
Sbjct: 249 WWDTFTTNVLPLLQHHGLVKDAGSYLMMEHVTGALSDLSFGEAPPASQPSLSSEERKERW 308
Query: 500 EHGIIDYRGLDRFENIKMHLDSKL 571
E G DY G D F+NIK LD+ L
Sbjct: 309 EQGQADYMGADSFDNIKRKLDTYL 332
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 176 bits (446), Expect = 5e-44
Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 14/204 (6%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYN 181
PDCFNSGVFVY+PS++TY +LL A ++GSFDGGDQGLLN FF++W+T DI+ HLPF+YN
Sbjct: 129 PDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYN 188
Query: 182 CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQ--EGCGQNYESLQL 355
S + YSYLPA+ F A+ KV+HF+G KPW++T+D+ T +V + + + + L +
Sbjct: 189 LSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNV 248
Query: 356 WWTTFIAYTKPLLHD--EMGGVCGRMASLDVSSFVPH----------EGKFSPKSHQQAW 499
WW F PLL + C DVS V H + S + ++ W
Sbjct: 249 WWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERKERW 308
Query: 500 EHGIIDYRGLDRFENIKMHLDSKL 571
E G DY G D F+NIK LD+ L
Sbjct: 309 EQGQADYMGADSFDNIKKKLDTYL 332
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 175 bits (444), Expect = 8e-44
Identities = 93/204 (45%), Positives = 120/204 (58%), Gaps = 14/204 (6%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYN 181
PDCFNSGVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI HLPFVYN
Sbjct: 129 PDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYN 188
Query: 182 CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGCGQNYESLQL 355
S + YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+ + E L L
Sbjct: 189 LSSISIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVNCDSQDPTVSHPEFLNL 248
Query: 356 WWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSF-VPHEGKFSPKSHQQAW 499
WW TF PLL M V G ++ L + S + ++ W
Sbjct: 249 WWDTFTTNVLPLLQHHGLVKDASSYLMMEHVSGALSDLSFGEAPAAPQPSMSSEERKERW 308
Query: 500 EHGIIDYRGLDRFENIKMHLDSKL 571
E G DY G D F+NIK LD+ L
Sbjct: 309 EQGQADYMGADSFDNIKRKLDTYL 332
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 172 bits (435), Expect = 9e-43
Identities = 95/222 (42%), Positives = 122/222 (54%), Gaps = 32/222 (14%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYN 181
PDCFNSGVFVY+PS++TY +LL A ++GSFDGGDQG+LN FFS+W+T DI+ HLPF+YN
Sbjct: 129 PDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYN 188
Query: 182 CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNY---ESLQ 352
S + YSYLPA+ F A KV+HF+G KPW++T+D T +V E N E L
Sbjct: 189 LSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSV-KSEAHDPNMTHPEFLI 247
Query: 353 LWWTTFIAYTKPLLHD-------------------EMGGVCGRMASLDVSSFVPH----- 460
LWW F PLL + CG DVS + H
Sbjct: 248 LWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSGAISHLSLGE 307
Query: 461 -----EGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 571
+ S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 308 IPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYL 349
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 147 bits (370), Expect = 3e-35
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 20/164 (12%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYN 181
PDCFNSGVFV++PS+ T+ LLQ A++ GSFDG DQGLLN FF NWST DI HLPF+YN
Sbjct: 162 PDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYN 221
Query: 182 CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQNYES---LQ 352
S Y+Y PA+ F + KV+HF+G KPW++ ++ +G+V+ Q + L
Sbjct: 222 LSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSVSSSQHQAAFLH 281
Query: 353 LWWTTFIAYTKP-----------------LLHDEMGGVCGRMAS 433
LWWT + P L H ++GG C AS
Sbjct: 282 LWWTVYQNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSAS 325
Score = 33.5 bits (75), Expect = 0.48
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 467 KFSPKSHQQAWEHGIIDYRGLDRFENIKMHLD 562
+ SP+ ++ WE G IDY G D F I+ LD
Sbjct: 466 ELSPEEERRKWEEGRIDYMGKDAFARIQEKLD 497
>sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1
Length = 480
Score = 73.9 bits (180), Expect = 3e-13
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFS-NWSTKDIKH------ 160
PD FNSGV + P DT L + + S DG DQG+LN FF+ N T ++
Sbjct: 18 PDMFNSGVMMLIPDADTASVLQNYIFENTSIDGSDQGILNQFFNQNCCTDELVKDSFSRE 77
Query: 161 --HLPFVYN-CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPW 277
L F YN + Y PA +F+ IK++HFIG HKPW
Sbjct: 78 WVQLSFTYNVTIPNLGYQSSPAMNYFKPSIKLIHFIGKHKPW 119
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 72.0 bits (175), Expect = 1e-12
Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Frame = +2
Query: 2 PDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFS---NWSTKDIKH---- 160
PD FN+GV + P +D L F I S DG DQG+ N FF+ N+S K++ H
Sbjct: 154 PDMFNTGVLLLIPDLDMATSLQDFLIKTVSIDGADQGIFNQFFNPICNYS-KEVLHKVSP 212
Query: 161 -----HLPFVYNCVSQAF-YSYLPAYTHFRADIKVLHFIGPHKPW-HHTFDSD 298
LPF YN + Y PA F+ I+++HFIG KPW +T D D
Sbjct: 213 LMEWIRLPFTYNVTMPNYGYQSSPAMNFFQQHIRLIHFIGTFKPWSRNTTDYD 265
>sp|P27128|RFAI_ECOLI Lipopolysaccharide 1,3-galactosyltransferase (Lipopolysaccharide
3-alpha-galactosyltransferase)
Length = 339
Score = 33.5 bits (75), Expect = 0.48
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 DQGLLNMFFSNWST-KDIKHHLPFVYNCVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWH 280
DQ +LNM ++ DIK++ F N Q S++ T+ D +H+IGP KPWH
Sbjct: 220 DQDVLNMLLADKLIFADIKYNTQFSLNY--QLKESFINPVTN---DTIFIHYIGPTKPWH 274
>sp|Q9NYG2|ZDHC3_HUMAN Palmitoyltransferase ZDHHC3 (Zinc finger DHHC domain-containing
protein 3) (DHHC-3) (Zinc finger protein 373) (DHHC1
protein)
Length = 327
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = +2
Query: 146 KDIKHHLPFVYNCVSQAFYSYLPAYTHFRA--DIKVLHFIGPHKPWHHTFDSDTGTVIFQ 319
+ + HH P+V NCV + Y +T + A + L +G H + H F+ D T
Sbjct: 151 RKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHALIMVGFH--FLHCFEEDWTTY--- 205
Query: 320 EGCGQNYESLQLWWTTFIAYTKPLLHDEMGGVCGRMASLDVSSFVP 457
G N E + A T LH++M + +S + SSF P
Sbjct: 206 ---GLNREEM--------AETGISLHEKMQPL--NFSSTECSSFSP 238
>sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase (HPrK/P) (HPr(Ser) kinase/phosphorylase)
Length = 315
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 341 ESLQLWWTTFIAYTKPLLHDEMGGVCGRMASLDVSSFVPHEGKFSPKSHQQAWEHGIIDY 520
E +QL T AY+K + HDE + +M L +FV G P+ QA E +
Sbjct: 52 ERVQLLGKTETAYSKNMSHDERLMIFRKMCQLTTPAFVISTGLPVPEELVQAGEENGVPI 111
Query: 521 RGLDR-----FENIKMHLDSKLA 574
G N+ +L+ KLA
Sbjct: 112 LGTKMTSSRILSNMTNYLEGKLA 134
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,245,240
Number of Sequences: 369166
Number of extensions: 1822717
Number of successful extensions: 4471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4460
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)