Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O24
(306 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43024|CX6A1_MOUSE Cytochrome c oxidase polypeptide VIa-... 31 0.78
sp|P12074|CX6A1_HUMAN Cytochrome c oxidase polypeptide VIa-... 29 3.0
sp|P32799|COX13_YEAST Cytochrome c oxidase polypeptide VIa,... 28 5.1
sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nu... 28 6.6
sp|P13182|CX6A1_BOVIN Cytochrome c oxidase polypeptide VIa-... 28 6.6
sp|P10818|CX6A1_RAT Cytochrome c oxidase polypeptide VIa-li... 28 6.6
sp|Q29131|MCR_TUPGB Mineralocorticoid receptor (MR) 28 6.6
sp|Q8KA32|Y080_BUCAP Hypothetical protein BUsg080 28 6.6
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor
Length = 111
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 HHGIEGPPVPKYEWCKTYT-PFPWGDGQKPLFEH 106
H E PP Y + T PFPWGDG LF +
Sbjct: 65 HEEHERPPFVAYPHLRIRTKPFPWGDGNHTLFHN 98
>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor
Length = 109
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 8 HHGI-EGPPVPKYEWCKTYT-PFPWGDGQKPLFEH 106
HHG E P Y + T PFPWGDG LF +
Sbjct: 62 HHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
>sp|P32799|COX13_YEAST Cytochrome c oxidase polypeptide VIa, mitochondrial precursor
Length = 129
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Frame = +2
Query: 32 VPKYEWCKTYT-------PFPWGDGQKPLF 100
VP EW + Y PF WGDG K LF
Sbjct: 87 VPDSEWPRDYEFMNIRSKPFFWGDGDKTLF 116
>sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105)
Length = 926
Score = 28.1 bits (61), Expect = 6.6
Identities = 22/98 (22%), Positives = 47/98 (47%)
Frame = -2
Query: 302 YRTFY*KNEHQLTLFQLETIS*LIQGKKYTIF*ILSNSIQCAHVAHVpreLSIFFQYLFF 123
+RT + + ++++ L+T L+ +K+T ++ + H+P++L++ LF
Sbjct: 558 FRTLGLQTKEEVSIEVLKTYIQLLINEKHT-------NLIAFYTCHLPQDLAVAQYALFL 610
Query: 122 *NHRKCAQKGASVHLPKEKACKFYTIHI*VLEDPQYHD 9
+C Q+ + L KE TI V+E+ + D
Sbjct: 611 EGVTECEQRHQCLELAKEADLDVATITKTVVENIRKKD 648
>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase polypeptide VIa-liver (SSG)
Length = 85
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 8 HHGIEG-PPVPKYEWCKTYT-PFPWGDGQKPLFEH 106
HHG E P Y + + PFPWGDG LF +
Sbjct: 38 HHGEEERPEFVAYPHLRIRSKPFPWGDGNHTLFHN 72
>sp|P10818|CX6A1_RAT Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor
Length = 111
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 HHGIEGPPVPKYEWCKTYT-PFPWGDGQKPLFEH 106
H E P Y + T PFPWGDG LF +
Sbjct: 65 HEEHERPEFVAYPHLRIRTKPFPWGDGNHTLFHN 98
>sp|Q29131|MCR_TUPGB Mineralocorticoid receptor (MR)
Length = 977
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 14 GIEGPPVPKYEWCKTYTPFPWGDGQKP 94
GI GPPVP +E T FP G Q+P
Sbjct: 470 GILGPPVPGFEGNCEGTGFPMGIKQEP 496
>sp|Q8KA32|Y080_BUCAP Hypothetical protein BUsg080
Length = 968
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 232 YKAKSTLFFKS*VTLFSVLMWLMCPVSFQYFFNISSF 122
Y +KS +F S F +L +L + F+YFFN +++
Sbjct: 7 YLSKSLIFIFS--LFFLILFFLESSIGFKYFFNFTNY 41
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,746,806
Number of Sequences: 369166
Number of extensions: 696066
Number of successful extensions: 1705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)