Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O21
(336 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 59 5e-09
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 51 1e-06
sp|P30938|SSR5_RAT Somatostatin receptor type 5 (SS5R) 33 0.27
sp|O08858|SSR5_MOUSE Somatostatin receptor type 5 (SS5R) 33 0.27
sp|P53813|PROS_RAT Vitamin K-dependent protein S precursor 30 1.3
sp|Q08761|PROS_MOUSE Vitamin K-dependent protein S precursor 30 1.3
sp|P98118|PROS_RABIT Vitamin K-dependent protein S precursor 30 1.7
sp|P07225|PROS_HUMAN Vitamin K-dependent protein S precursor 30 1.7
sp|Q28520|PROS_MACMU Vitamin K-dependent protein S precursor 30 1.7
sp|Q14393|GAS6_HUMAN Growth-arrest-specific protein 6 precu... 30 2.3
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 58.5 bits (140), Expect = 5e-09
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +3
Query: 6 GLCGCFDDCGTCLL-TYFVPCYLIGKDAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRER 182
G+C CF DCG CL T+ PC +G A + C LCG + +R+ R R
Sbjct: 29 GMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVA---------MRTLYRTR 77
Query: 183 RNISGNIFEDFICALCCNCCIVAQMHQEV 269
I G+I +D++ LCC C + Q+ +++
Sbjct: 78 YGIPGSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 9 LCGCFDDCGTCLLTYFVPCY-LIGKDAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRERR 185
LC CF DCG CL F C+ +G A + C LCG +R+ R R
Sbjct: 27 LCDCFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGTTVA---------MRTLYRTRY 75
Query: 186 NISGNIFEDFICALCCNCCIVAQMHQEV 269
I G+I +D++ L C C V Q+ +++
Sbjct: 76 GIPGSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|P30938|SSR5_RAT Somatostatin receptor type 5 (SS5R)
Length = 363
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +2
Query: 8 SLWVF**LWNMFINIFCTVLFNWKRCRSRW*QLFSLWFSGFICWT---------LYYCIC 160
++WVF L ++ + +F V W C W + LW + FI +T L C+C
Sbjct: 160 AVWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLC 219
>sp|O08858|SSR5_MOUSE Somatostatin receptor type 5 (SS5R)
Length = 362
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +2
Query: 8 SLWVF**LWNMFINIFCTVLFNWKRCRSRW*QLFSLWFSGFICWT---------LYYCIC 160
++WVF L ++ + +F V W C W + LW + FI +T L C+C
Sbjct: 159 AVWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLC 218
>sp|P53813|PROS_RAT Vitamin K-dependent protein S precursor
Length = 675
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 244 LLHKCIKRLCQWEDRAWQLNENKPNTDFFY 333
L +CI+ LC E+ A ++ EN P TD+FY
Sbjct: 54 LERECIEELCNKEE-AREVFENNPETDYFY 82
>sp|Q08761|PROS_MOUSE Vitamin K-dependent protein S precursor
Length = 675
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 244 LLHKCIKRLCQWEDRAWQLNENKPNTDFFY 333
L +CI+ LC E+ A ++ EN P TD+FY
Sbjct: 54 LERECIEELCNKEE-AREVFENNPETDYFY 82
>sp|P98118|PROS_RABIT Vitamin K-dependent protein S precursor
Length = 646
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 244 LLHKCIKRLCQWEDRAWQLNENKPNTDFFY 333
L +CI+ LC E+ A ++ EN P TD+FY
Sbjct: 25 LERECIEELCNKEE-AREVFENDPETDYFY 53
>sp|P07225|PROS_HUMAN Vitamin K-dependent protein S precursor
Length = 676
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 244 LLHKCIKRLCQWEDRAWQLNENKPNTDFFY 333
L +CI+ LC E+ A ++ EN P TD+FY
Sbjct: 54 LERECIEELCNKEE-AREVFENDPETDYFY 82
>sp|Q28520|PROS_MACMU Vitamin K-dependent protein S precursor
Length = 649
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 244 LLHKCIKRLCQWEDRAWQLNENKPNTDFFY 333
L +CI+ LC E+ A ++ EN P TD+FY
Sbjct: 27 LERECIEELCNKEE-AREVFENDPETDYFY 55
>sp|Q14393|GAS6_HUMAN Growth-arrest-specific protein 6 precursor (GAS-6)
Length = 721
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 244 LLHKCIKRLCQWEDRAWQLNENKPNTDFFY 333
L +C++ LC E+ A ++ EN P TD+FY
Sbjct: 61 LERECVEELCSREE-AREVFENDPETDYFY 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,296,578
Number of Sequences: 369166
Number of extensions: 729795
Number of successful extensions: 2077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2074
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)