Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O13
(814 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18576|NFYA_RAT Nuclear transcription factor Y subunit a... 103 6e-22
sp|Q5E9S2|NFYA_BOVIN Nuclear transcription factor Y subunit... 103 6e-22
sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit... 101 2e-21
sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit... 101 2e-21
sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subuni... 86 9e-17
sp|P06774|HAP2_YEAST Transcriptional activator HAP2 84 6e-16
sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subuni... 83 1e-15
sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subuni... 82 2e-15
sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subuni... 82 2e-15
sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subuni... 82 2e-15
>sp|P18576|NFYA_RAT Nuclear transcription factor Y subunit alpha (Nuclear transcription
factor Y subunit A) (NF-YA) (CAAT-box DNA-binding
protein subunit A) (CCAAT-binding transcription factor
subunit B) (CBF-B)
Length = 341
Score = 103 bits (257), Expect = 6e-22
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Frame = +2
Query: 71 TLTQPIVLAQGQ-------GGNTILGIQTSDGNIIPLQLASNPN----GSQVMMVVPSQL 217
T TQ + QGQ G + +DG I+ + + P G+Q++ +
Sbjct: 146 TQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQGMITIPAASLAGAQIVQTGANTN 205
Query: 218 STQSATLTGQVT-----NVSSHDQVPQCVQPAQIIGSYDTXXXXXXXXXXXXXXXPLYVN 382
+T S T VT NV + + V A GS PLYVN
Sbjct: 206 TTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGA---GSVPAIQRIPLPGAEMLEEEPLYVN 262
Query: 383 AKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKKTSKNN 562
AKQY+RILKRRQARAKLEA+G++PK R KYLHESRH+HAM R RGEGG+F S K+ +
Sbjct: 263 AKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPH 322
Query: 563 MNE 571
M +
Sbjct: 323 MQD 325
>sp|Q5E9S2|NFYA_BOVIN Nuclear transcription factor Y subunit alpha (Nuclear transcription
factor Y subunit A) (NF-YA) (CAAT-box DNA-binding
protein subunit A)
Length = 341
Score = 103 bits (257), Expect = 6e-22
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Frame = +2
Query: 71 TLTQPIVLAQGQ-------GGNTILGIQTSDGNIIPLQLASNPN----GSQVMMVVPSQL 217
T TQ + QGQ G + +DG I+ + + P G+Q++ +
Sbjct: 146 TQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQGMITIPAASLAGAQIVQTGANTN 205
Query: 218 STQSATLTGQVT-----NVSSHDQVPQCVQPAQIIGSYDTXXXXXXXXXXXXXXXPLYVN 382
+T S T VT NV + + V A GS PLYVN
Sbjct: 206 TTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGA---GSVPAIQRIPLPGAEMLEEEPLYVN 262
Query: 383 AKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKKTSKNN 562
AKQY+RILKRRQARAKLEA+G++PK R KYLHESRH+HAM R RGEGG+F S K+ +
Sbjct: 263 AKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPH 322
Query: 563 MNE 571
M +
Sbjct: 323 MQD 325
>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha (Nuclear transcription
factor Y subunit A) (NF-YA) (CAAT-box DNA-binding
protein subunit A)
Length = 346
Score = 101 bits (252), Expect = 2e-21
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
PLYVNAKQY+RILKRRQARAKLEA+G++PK R KYLHESRH+HAM R RGEGG+F S K+
Sbjct: 263 PLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 322
Query: 548 TSKNNMNE 571
+M +
Sbjct: 323 KDSPHMQD 330
>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha (Nuclear transcription
factor Y subunit A) (NF-YA) (CAAT-box DNA-binding
protein subunit A)
Length = 347
Score = 101 bits (252), Expect = 2e-21
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
PLYVNAKQY+RILKRRQARAKLEA+G++PK R KYLHESRH+HAM R RGEGG+F S K+
Sbjct: 264 PLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 323
Query: 548 TSKNNMNE 571
+M +
Sbjct: 324 KDSPHMQD 331
>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 (AtNF-YA-6)
Length = 308
Score = 86.3 bits (212), Expect = 9e-17
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
P++VNAKQY IL+RR+ RAKLEAQ +L K R YLHESRH HA+ RVRG GG+F + KK
Sbjct: 172 PIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231
Query: 548 TSKNN 562
++N
Sbjct: 232 HQESN 236
>sp|P06774|HAP2_YEAST Transcriptional activator HAP2
Length = 265
Score = 83.6 bits (205), Expect = 6e-16
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKF 532
P YVNAKQY RILKRR ARAKLE + R+ + R YLHESRHKHAM R RGEGG+F
Sbjct: 160 PFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEGGRF 214
>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 (AtNF-YA-5)
Length = 308
Score = 82.8 bits (203), Expect = 1e-15
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
P++VNAKQY+ IL+RR+ RAKLEAQ +L K R YLHESRH HA+ R RG GG+F + KK
Sbjct: 179 PIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKK 238
Query: 548 TSKNN 562
+++
Sbjct: 239 LQESS 243
>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)
(Transcriptional activator HAP2C)
Length = 340
Score = 82.0 bits (201), Expect = 2e-15
Identities = 37/60 (61%), Positives = 47/60 (78%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
P++VNAKQY+ I++RRQ RAKLEAQ +L + R YLHESRH HA+ R RG GG+F + KK
Sbjct: 180 PVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKK 239
>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 (AtNF-YA-8)
Length = 355
Score = 82.0 bits (201), Expect = 2e-15
Identities = 37/64 (57%), Positives = 49/64 (76%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
P++VNAKQ++ I++RRQ RAKLEAQ +L K R YLHESRH HA+ R RG GG+F + KK
Sbjct: 200 PVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKK 259
Query: 548 TSKN 559
++
Sbjct: 260 LQES 263
>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 (AtNF-YA-7)
Length = 190
Score = 81.6 bits (200), Expect = 2e-15
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = +2
Query: 368 PLYVNAKQYNRILKRRQARAKLEAQGRLPKGRSKYLHESRHKHAMNRVRGEGGKFCSIKK 547
P++VNAKQY+ IL+RRQ+RA+LE+Q ++ K R YLHESRH HA+ R RG GG+F + KK
Sbjct: 101 PVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKK 160
Query: 548 TSKNNMNEVH 577
+++ + H
Sbjct: 161 EDEHHEDSSH 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,334,741
Number of Sequences: 369166
Number of extensions: 1427831
Number of successful extensions: 3320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3317
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)