Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O08
(820 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subuni... 481 e-135
sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subun... 480 e-135
sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subun... 478 e-135
sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subun... 478 e-135
sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subun... 478 e-134
sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit... 478 e-134
sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subun... 476 e-134
sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subuni... 470 e-132
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 468 e-132
sp|Q39291|VATA_BRANA Vacuolar ATP synthase catalytic subuni... 416 e-116
>sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 617
Score = 481 bits (1238), Expect = e-135
Identities = 236/273 (86%), Positives = 260/273 (95%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE
Sbjct: 308 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 367
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G PD R+GSV+IVGAVSPPGGDFSDPVT+ATL
Sbjct: 368 MPADSGYPAYLGARLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPGGDFSDPVTAATL 426
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFY+K+Y EFV LRTK EILQEE
Sbjct: 427 GIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEE 486
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YSSYD+FCPFYKTVGMLKN+I
Sbjct: 487 EDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIIS 546
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD +RHAVE+T+QSD+K+TW++IR+AM + +Y
Sbjct: 547 FYDMSRHAVESTAQSDNKVTWNVIRDAMGNVLY 579
>sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1) (Isoform VA68)
Length = 617
Score = 480 bits (1235), Expect = e-135
Identities = 237/273 (86%), Positives = 257/273 (94%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGRLAE
Sbjct: 308 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAE 367
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATL
Sbjct: 368 MPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATL 426
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK EILQEE
Sbjct: 427 GIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEE 486
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML NMI
Sbjct: 487 EDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMIA 546
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD AR AVETT+QSD+KITWS+IRE M D +Y
Sbjct: 547 FYDMARRAVETTAQSDNKITWSIIREHMGDILY 579
>sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 478 bits (1231), Expect = e-135
Identities = 236/273 (86%), Positives = 257/273 (94%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGRLAE
Sbjct: 308 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAE 367
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATL
Sbjct: 368 MPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATL 426
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK EILQEE
Sbjct: 427 GIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEE 486
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML NMI
Sbjct: 487 EDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMIA 546
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD AR AVETT+QSD+KITWS+IRE M + +Y
Sbjct: 547 FYDMARRAVETTAQSDNKITWSIIREHMGEILY 579
>sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subunit A isoform 2 (V-ATPase A
subunit 2) (Vacuolar proton pump alpha subunit 2)
(V-ATPase 69 kDa subunit 2)
Length = 614
Score = 478 bits (1230), Expect = e-135
Identities = 236/273 (86%), Positives = 259/273 (94%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE
Sbjct: 305 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 364
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MP +SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATL
Sbjct: 365 MPRDSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATL 423
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++ EFV LRTK EILQEE
Sbjct: 424 GIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNFPEFVPLRTKVKEILQEE 483
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YSSYD+FCPFYKTVGML+N+I
Sbjct: 484 EDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLRNIID 543
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD ARH+VE+T+QS++KITW++IREAM + +Y
Sbjct: 544 FYDMARHSVESTAQSENKITWNVIREAMGNIMY 576
>sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subunit A, osteoclast isoform
(V-ATPase A subunit 2) (Vacuolar proton pump alpha
subunit 2) (V-ATPase 69 kDa subunit 2) (Isoform HO68)
Length = 615
Score = 478 bits (1229), Expect = e-134
Identities = 235/273 (86%), Positives = 259/273 (94%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE
Sbjct: 306 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 365
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G PD R+GSV+IVGAVSPPGGDFSDPVT+ATL
Sbjct: 366 MPADSGYPAYLGARLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPGGDFSDPVTTATL 424
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++ EFV LRTK EILQEE
Sbjct: 425 GIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNFPEFVPLRTKVKEILQEE 484
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YS YD+FCPFYKTVGMLKNMI
Sbjct: 485 EDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLKNMIA 544
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD +RHAVE+T+QS++KITW++IR++M + +Y
Sbjct: 545 FYDMSRHAVESTAQSENKITWNVIRDSMGNILY 577
>sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 478 bits (1229), Expect = e-134
Identities = 236/273 (86%), Positives = 257/273 (94%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMA+STSRWAEALREISGRLAE
Sbjct: 308 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGRLAE 367
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSVTIVGAVSPPGGDFSDPVTSATL
Sbjct: 368 MPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVTIVGAVSPPGGDFSDPVTSATL 426
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK EILQEE
Sbjct: 427 GIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEE 486
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML NMI
Sbjct: 487 EDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMIA 546
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD AR AVETT+QSD+KITWS+IRE M + +Y
Sbjct: 547 FYDLARRAVETTAQSDNKITWSIIREHMGEILY 579
>sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 476 bits (1225), Expect = e-134
Identities = 235/273 (86%), Positives = 256/273 (93%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGRLAE
Sbjct: 308 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAE 367
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATL
Sbjct: 368 MPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATL 426
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV LRTK EILQEE
Sbjct: 427 GIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEE 486
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
DL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPFYKTVGML NMI
Sbjct: 487 GDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMIS 546
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD AR AVETT+QSD+KITWS+IRE M + +Y
Sbjct: 547 FYDMARRAVETTAQSDNKITWSIIREHMGEILY 579
>sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 615
Score = 470 bits (1209), Expect = e-132
Identities = 234/274 (85%), Positives = 257/274 (93%), Gaps = 1/274 (0%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE
Sbjct: 306 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 365
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATL
Sbjct: 366 MPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATL 424
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++ EFV K EILQEE
Sbjct: 425 GIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNFQEFVPTAYKVKEILQEE 484
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVG-MLKNMI 717
EDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YS+YD+FCPFYKTVG ML+NMI
Sbjct: 485 EDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSAYDRFCPFYKTVGRMLRNMI 544
Query: 718 HFYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FYD ARHAVETT+QS++KITW++IR++M + +Y
Sbjct: 545 GFYDMARHAVETTAQSENKITWNVIRDSMGNILY 578
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 468 bits (1205), Expect = e-132
Identities = 230/273 (84%), Positives = 256/273 (93%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNV+MMADSTSRWAEALREISGRLAE
Sbjct: 305 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVAMMADSTSRWAEALREISGRLAE 364
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYLGARLA+FYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTSATL
Sbjct: 365 MPADSGYPAYLGARLATFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTSATL 423
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
GIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALD++YDK+Y EFV LRTK EILQEE
Sbjct: 424 GIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDEYYDKNYPEFVPLRTKVKEILQEE 483
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
EDLSEIVQLVGK SLAE+DK+TLEVA+L+KDDFLQQN YS YD+ CPFYKTVGML+N++
Sbjct: 484 EDLSEIVQLVGKASLAETDKVTLEVAKLLKDDFLQQNSYSPYDRVCPFYKTVGMLRNIMA 543
Query: 721 FYDHARHAVETTSQSDSKITWSMIREAMNDTIY 819
FY+ ARHAVE+T+QSD+KITW+ IRE+M +Y
Sbjct: 544 FYETARHAVESTAQSDNKITWNTIRESMGGIMY 576
>sp|Q39291|VATA_BRANA Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit) (Tonoplast ATPase 70 kDa subunit) (BN59)
Length = 623
Score = 416 bits (1069), Expect = e-116
Identities = 203/274 (74%), Positives = 240/274 (87%), Gaps = 1/274 (0%)
Frame = +1
Query: 1 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 180
RT LVANTSNMPVAAREASIYTGIT++EYFRDMGYNVSMMADSTSRWAEALREISGRLAE
Sbjct: 311 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 370
Query: 181 MPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTSATL 360
MPA+SGYPAYL ARLASFYERAG+V+C+GGP ER GSVTIVGAVSPPGGDFSDPVTSATL
Sbjct: 371 MPADSGYPAYLAARLASFYERAGKVKCLGGP-ERNGSVTIVGAVSPPGGDFSDPVTSATL 429
Query: 361 GIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVALRTKTSEILQEE 540
IVQVFWGLDKKLAQRKHFPS+NWLIS+SKY+ AL+ FY+K ++F+ +RTK E+LQ E
Sbjct: 430 SIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDSDFIDIRTKAREVLQRE 489
Query: 541 EDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPFYKTVGMLKNMIH 720
+DL+EIVQLVGK +LAE DKITLE A+L+++D+L QN ++ YDKFCPFYK+V M++N+IH
Sbjct: 490 DDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIH 549
Query: 721 FYDHARHAVETTSQSD-SKITWSMIREAMNDTIY 819
FY+ A AVE + D KI++S+I+ + D Y
Sbjct: 550 FYNLANQAVERGAGMDGQKISYSLIKHRLGDLFY 583
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,808,409
Number of Sequences: 369166
Number of extensions: 2341019
Number of successful extensions: 8068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7575
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)