Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O03
(422 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubi... 204 8e-53
sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubi... 203 1e-52
sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubi... 203 1e-52
sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kD... 202 2e-52
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 200 9e-52
sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa... 200 9e-52
sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 200 1e-51
sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 199 2e-51
sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubi... 198 3e-51
sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 198 3e-51
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Xubc4)
Length = 147
Score = 204 bits (518), Expect = 8e-53
Identities = 95/127 (74%), Positives = 102/127 (80%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MALKRI EL L DPPAQCSAGP DM HW ATIMGP DSPY+GG+F L+I FP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F T+I+HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLLCDPN DDPL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 402 SNAANLY 422
A +Y
Sbjct: 121 PEIARIY 127
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
phosphatase) (PAPase)
sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
Length = 147
Score = 203 bits (517), Expect = 1e-52
Identities = 95/127 (74%), Positives = 102/127 (80%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MALKRI EL L DPPAQCSAGP DM HW ATIMGP DSPY+GG+F L+I FP DY
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F T+I+HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLLCDPN DDPL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 402 SNAANLY 422
A +Y
Sbjct: 121 PEIARIY 127
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2)
Length = 147
Score = 203 bits (516), Expect = 1e-52
Identities = 94/127 (74%), Positives = 104/127 (81%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MALKRIQ EL+ L DPPAQCSAGP D+ HW ATIMGP +SPY+GG+F L+I FP DY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F T+I+HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLLCDPN DDPL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 402 SNAANLY 422
A +Y
Sbjct: 121 PEIARIY 127
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Effete protein)
Length = 147
Score = 202 bits (515), Expect = 2e-52
Identities = 94/127 (74%), Positives = 103/127 (81%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MALKRI EL+ L DPPAQCSAGP D+ HW ATIMGP DSPY+GG+F L+I FP DY
Sbjct: 1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F T+I+HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLLCDPN DDPL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 402 SNAANLY 422
A +Y
Sbjct: 121 PEIARIY 127
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 200 bits (509), Expect = 9e-52
Identities = 91/127 (71%), Positives = 102/127 (80%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MALKRIQ EL L DPPA CSAGP D+ HW ATIMGP DS Y+GG+F L++ FP DY
Sbjct: 1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP + F TKI+HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLLCDPN DDPL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 402 SNAANLY 422
+ A +Y
Sbjct: 121 PDIAQIY 127
>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 148
Score = 200 bits (509), Expect = 9e-52
Identities = 94/127 (74%), Positives = 100/127 (78%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MA KRI EL+ L DPP CSAGP DM HW ATIMGP DSPY GG+F +SI FPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F TK+FHPNINSNGSICLDILK QWSPALTISKVLLSICSLL DPN DDPL
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 402 SNAANLY 422
A++Y
Sbjct: 121 PEIAHMY 127
>sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (Ubiquitin-protein ligase
9) (Ubiquitin carrier protein 9) (UBCAT4B)
Length = 148
Score = 200 bits (508), Expect = 1e-51
Identities = 93/127 (73%), Positives = 101/127 (79%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MA KRI EL+ L DPP CSAGP DM HW ATIMGP+DSPY GG+F ++I FPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F TK+FHPNINSNGSICLDILK QWSPALTISKVLLSICSLL DPN DDPL
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 402 SNAANLY 422
A++Y
Sbjct: 121 PEIAHMY 127
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
8) (Ubiquitin carrier protein 8) (UBCAT4A)
Length = 148
Score = 199 bits (507), Expect = 2e-51
Identities = 93/127 (73%), Positives = 101/127 (79%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MA KRI EL+ L DPP CSAGP DM HW ATIMGPA+SPY GG+F ++I FPPDY
Sbjct: 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F TK+FHPNINSNGSICLDILK QWSPALTISKVLLSICSLL DPN DDPL
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 402 SNAANLY 422
A++Y
Sbjct: 121 PEIAHMY 127
>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
(Ubiquitin carrier protein D4) (Ubiquitin-conjugating
enzyme E2-17 kDa 4) (E2(17)KB 4)
Length = 147
Score = 198 bits (504), Expect = 3e-51
Identities = 92/127 (72%), Positives = 102/127 (80%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MALKRI EL L DPPAQCSAGP DM HW ATIMGP DSPY+GG F L+I+FP +Y
Sbjct: 1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V+F T+I+HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLLCDPN DDPL
Sbjct: 61 PFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLV 120
Query: 402 SNAANLY 422
A +Y
Sbjct: 121 PEIAQIY 127
>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
11) (Ubiquitin carrier protein 11)
Length = 148
Score = 198 bits (504), Expect = 3e-51
Identities = 92/127 (72%), Positives = 101/127 (79%)
Frame = +3
Query: 42 MALKRIQSELRSLMSDPPAQCSAGPKESDMVHWAATIMGPADSPYEGGIFSLSIEFPPDY 221
MA KRI EL+ L DPP+ CSAGP DM HW ATIMGP +SPY GG+F +SI FPPDY
Sbjct: 1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDY 60
Query: 222 PFKPPMVKFDTKIFHPNINSNGSICLDILKGQWSPALTISKVLLSICSLLCDPNADDPLD 401
PFKPP V F TK++HPNINSNGSICLDILK QWSPALTISKVLLSICSLL DPN DDPL
Sbjct: 61 PFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 402 SNAANLY 422
A++Y
Sbjct: 121 PEIAHMY 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,337,217
Number of Sequences: 369166
Number of extensions: 1071872
Number of successful extensions: 2683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2628
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)