Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N16
(374 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59282|P25B_HUMAN Protein p25-beta 45 7e-05
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 44 1e-04
sp|Q9BW30|CG38_HUMAN Protein CGI-38 44 2e-04
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 43 3e-04
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 40 0.002
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 40 0.002
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 38 0.008
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 38 0.008
sp|O46409|APOA4_PIG Apolipoprotein A-IV precursor (Apo-AIV)... 31 1.0
sp|Q7Z3D6|CN159_HUMAN Protein C14orf159, mitochondrial prec... 29 2.9
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 44.7 bits (104), Expect = 7e-05
Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 58 DEVKKKIIS----NGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXXEGR 225
DEV + I P GATKA+ GA +RLTD YTG KE FD E+ GR
Sbjct: 88 DEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKELFD-ESGKGKGIAGR 146
Query: 226 EYLVD 240
E + D
Sbjct: 147 EEMTD 151
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 43.9 bits (102), Expect = 1e-04
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +1
Query: 58 DEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXXEGREYLV 237
D + + I P G TKA GA +RLTD YTG+ KE FD E+ GR+ ++
Sbjct: 97 DAICQLIAGKEPANIGVTKAKTGGAVDRLTDTSKYTGSHKERFD-ESGKGKGIAGRQDIL 155
Query: 238 DE 243
D+
Sbjct: 156 DD 157
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 43.5 bits (101), Expect = 2e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +1
Query: 58 DEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXXEGREYLV 237
D + + + P G TKA GA +RLTD YTG+ KE FD E+ GR+ ++
Sbjct: 97 DAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFD-ESGKGKGIAGRQDIL 155
Query: 238 DE 243
D+
Sbjct: 156 DD 157
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 AKSCKKDAAAISDEVKKKIIS-NGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAE 195
A+ KK D + +K+ P GA KA+ G RLTD YTGA KE FDAE
Sbjct: 88 ARQSKKPIQDELDAITEKLAKLEAPSVGGAAKANAAGVYSRLTDHTKYTGAHKERFDAE 146
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/69 (39%), Positives = 30/69 (43%)
Frame = +1
Query: 37 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 216
K A EV K I P G TKA RLTD +TG+ KE FD +
Sbjct: 130 KSAEEAVREVHKLIEGKAPIISGVTKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGR 188
Query: 217 EGREYLVDE 243
GR LVDE
Sbjct: 189 AGRVDLVDE 197
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/61 (39%), Positives = 29/61 (47%)
Frame = +1
Query: 61 EVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXXEGREYLVD 240
EV + I P G TKA RLTD +TG+ KE FD ++ GR LVD
Sbjct: 138 EVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKERFD-QSGKGKGKAGRVDLVD 196
Query: 241 E 243
E
Sbjct: 197 E 197
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/61 (39%), Positives = 28/61 (45%)
Frame = +1
Query: 61 EVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXXEGREYLVD 240
EV + I P G TKA RLTD +TG+ KE FD + GR LVD
Sbjct: 139 EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGKAGRVDLVD 197
Query: 241 E 243
E
Sbjct: 198 E 198
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 7 FIPAYAKSCKKDAAAISDEVKKKIISNGPKAHGATKASKDGAT-ERLTDVKGYTGARKEA 183
F+ AK+ K + + E+K+K+ S G + A K A +RLTD YTG+ KE
Sbjct: 101 FLDDLAKTKKVELS----EIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSHKER 156
Query: 184 FDAETXXXXXXEGREYLVD 240
FDA + GR +VD
Sbjct: 157 FDA-SGKGKGIAGRRNVVD 174
>sp|O46409|APOA4_PIG Apolipoprotein A-IV precursor (Apo-AIV) (ApoA-IV)
Length = 382
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 4 FFIPAYAKSCKKDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEA 183
F + A+ K +A +DE+++K++ HG K + +G + L +++ + + E
Sbjct: 243 FQMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGNTEGLQKSLLELRSHLDQQVEE 302
Query: 184 F 186
F
Sbjct: 303 F 303
>sp|Q7Z3D6|CN159_HUMAN Protein C14orf159, mitochondrial precursor
Length = 616
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 132 CTIFAGFCC--TVSLWSIANNLLFNFIRNCCSI 40
C AGFCC V++ I + L +R CCS+
Sbjct: 152 CVTHAGFCCPLVVTMRPIPKDKLEGLVRACCSL 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,867,292
Number of Sequences: 369166
Number of extensions: 445681
Number of successful extensions: 1458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)