Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N12
(707 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91VH6|CB004_MOUSE Protein C2orf4 homolog 286 5e-77
sp|Q9Y316|CB004_HUMAN Protein C2orf4 (C21orf19-like protein) 285 6e-77
sp|Q22915|YC4P_CAEEL Hypothetical UPF0103 protein C37C3.8 i... 216 6e-56
sp|Q10212|YAY4_SCHPO Hypothetical UPF0103 protein C4H3.04c ... 170 3e-42
sp|P47085|YJX8_YEAST Hypothetical UPF0103 protein YJR008w 144 3e-34
sp|O59292|Y1626_PYRHO Hypothetical UPF0103 protein PH1626 91 4e-18
sp|O67039|Y890_AQUAE Hypothetical UPF0103 protein AQ_890 88 2e-17
sp|Q9V189|Y539_PYRAB Hypothetical UPF0103 protein PYRAB05390 87 6e-17
sp|Q8U0F2|YG38_PYRFU Hypothetical UPF0103 protein PF1638 86 7e-17
sp|Q9HLJ1|Y237_THEAC Hypothetical UPF0103 protein Ta0237 77 6e-14
>sp|Q91VH6|CB004_MOUSE Protein C2orf4 homolog
Length = 297
Score = 286 bits (731), Expect = 5e-77
Identities = 135/235 (57%), Positives = 166/235 (70%)
Frame = +3
Query: 3 GSWYXXXXXXXXXXXXXXXXXXKISHSPARAIITPHAGYTYSGSTAGFAYKQIDPSQIER 182
GSWY + + PARAII PHAGYTY GS A AYKQ+DPS R
Sbjct: 14 GSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSVTRR 73
Query: 183 VFILGPSHHVSYGENCVLSNFDEYETPFYNLPIDKKIYSELLATNNFGQAKCNHDEDEHS 362
+FILGPSHHV C LS+ D Y TP Y+L ID+KIY EL T F + DEDEHS
Sbjct: 74 IFILGPSHHVPLSR-CALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHS 132
Query: 363 LEMQLPYVAKIMESRKGQFTIIPIIVGNLSPTHEEKYGKILAKYMLDKSNLFVISSDFCH 542
+EM LPY AK MES K +FTIIP++VG LS + E+++GK+ +KY+ D SNLFV+SSDFCH
Sbjct: 133 IEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCH 192
Query: 543 WGKRFRYTYYDEKFGEIWKSIENLDRMGMDAVESLDPEKFNSYLQQYHNTICGRH 707
WG+RFRY+YYDE GEI++SIE+LD+MGM +E LDP F++YL++YHNTICGRH
Sbjct: 193 WGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRH 247
>sp|Q9Y316|CB004_HUMAN Protein C2orf4 (C21orf19-like protein)
Length = 297
Score = 285 bits (730), Expect = 6e-77
Identities = 135/235 (57%), Positives = 166/235 (70%)
Frame = +3
Query: 3 GSWYXXXXXXXXXXXXXXXXXXKISHSPARAIITPHAGYTYSGSTAGFAYKQIDPSQIER 182
GSWY + + PARAII PHAGYTY GS A AYKQ+DPS R
Sbjct: 14 GSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSITRR 73
Query: 183 VFILGPSHHVSYGENCVLSNFDEYETPFYNLPIDKKIYSELLATNNFGQAKCNHDEDEHS 362
+FILGPSHHV C LS+ D Y TP Y+L ID+KIY EL T F + DEDEHS
Sbjct: 74 IFILGPSHHVPLSR-CALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHS 132
Query: 363 LEMQLPYVAKIMESRKGQFTIIPIIVGNLSPTHEEKYGKILAKYMLDKSNLFVISSDFCH 542
+EM LPY AK MES K +FTIIP++VG LS + E+++GK+ +KY+ D SNLFV+SSDFCH
Sbjct: 133 IEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCH 192
Query: 543 WGKRFRYTYYDEKFGEIWKSIENLDRMGMDAVESLDPEKFNSYLQQYHNTICGRH 707
WG+RFRY+YYDE GEI++SIE+LD+MGM +E LDP F++YL++YHNTICGRH
Sbjct: 193 WGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRH 247
>sp|Q22915|YC4P_CAEEL Hypothetical UPF0103 protein C37C3.8 in chromosome V
Length = 350
Score = 216 bits (549), Expect = 6e-56
Identities = 104/208 (50%), Positives = 146/208 (70%), Gaps = 1/208 (0%)
Frame = +3
Query: 87 ARAIITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPF 266
ARA+I+PHAGY+Y G TA +A+KQ+ S +ERVFILGPSH V+ C ++ +Y TP
Sbjct: 93 ARALISPHAGYSYCGETAAYAFKQVVSSAVERVFILGPSHVVALN-GCAITTCSKYRTPL 151
Query: 267 YNLPIDKKIYSELLATNNFGQAKCNHDEDEHSLEMQLPYVAKIMESRKGQFTIIPIIVGN 446
+L +D KI EL AT +F +E EHS+EMQLP++AK+M S++ +TI+P++VG+
Sbjct: 152 GDLIVDHKINEELRATRHFDLMDRRDEESEHSIEMQLPFIAKVMGSKR--YTIVPVLVGS 209
Query: 447 LSPTHEEKYGKILAKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFG-EIWKSIENLDRM 623
L + ++ YG I A YM D NLFVISSDFCHWG+RF ++ YD I++ I N+D+
Sbjct: 210 LPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGERFSFSPYDRHSSIPIYEQITNMDKQ 269
Query: 624 GMDAVESLDPEKFNSYLQQYHNTICGRH 707
GM A+E+L+P FN YL++ NTICGR+
Sbjct: 270 GMSAIETLNPAAFNDYLKKTQNTICGRN 297
>sp|Q10212|YAY4_SCHPO Hypothetical UPF0103 protein C4H3.04c in chromosome I
Length = 309
Score = 170 bits (431), Expect = 3e-42
Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 21/227 (9%)
Frame = +3
Query: 90 RAIITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPFY 269
R +I+PHAGY YSG A ++Q+D S+I+RVF+ GPSHH+ + C++S TP
Sbjct: 40 RFVISPHAGYMYSGKVASQGFQQLDFSKIQRVFVFGPSHHI-FTRKCLVSRASICSTPLG 98
Query: 270 NLPIDKKIYSELLATNN-FGQAKCNHDEDEHSLEMQLPYVA--KIMESRKGQFTIIPIIV 440
+L +D+ + +L+A++N F + DE EHSLEMQ P +A + + G+ I+PI++
Sbjct: 99 DLKVDEDLCQKLVASDNSFDSMTLDVDESEHSLEMQFPLLAFHLLKQGCLGKVKIVPIMI 158
Query: 441 GNLSPTHEEKYGKILAKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFGE---------- 590
G L+ T K L++Y+ D+SN FVISSDFCHWG+RF YT Y +
Sbjct: 159 GALTSTTMMAAAKFLSQYIKDESNSFVISSDFCHWGRRFGYTLYLNDTNQLEDAVLKYKR 218
Query: 591 --------IWKSIENLDRMGMDAVESLDPEKFNSYLQQYHNTICGRH 707
I++SI NLD +GM +E+ + F+ YL+ NTICGR+
Sbjct: 219 RGGPTSPKIYESISNLDHIGMKIIETKSSDDFSEYLKTTQNTICGRY 265
>sp|P47085|YJX8_YEAST Hypothetical UPF0103 protein YJR008w
Length = 338
Score = 144 bits (362), Expect = 3e-34
Identities = 88/246 (35%), Positives = 135/246 (54%), Gaps = 41/246 (16%)
Frame = +3
Query: 87 ARAIITPHAGYTYSGSTAGFAYKQIDPSQ-IERVFILGPSHHVSYGENCVLSNFDEYETP 263
AR II PHAGY Y G T ++Y +D ++ ++R+FILGPSHH+ + ++S F E ETP
Sbjct: 40 ARIIICPHAGYRYCGPTMAYSYASLDLNRNVKRIFILGPSHHIYFKNQILVSAFSELETP 99
Query: 264 FYNLPIDKKIYSELLATNNFGQAK-----CNHDED--EHSLEMQLPYVAKIMESRK---G 413
NL +D + L+ K +HD D EHSLEMQLP + + ++ R+
Sbjct: 100 LGNLKVDTDLCKTLIQKEYPENGKKLFKPMDHDTDMAEHSLEMQLPMLVETLKWREISLD 159
Query: 414 QFTIIPIIVGNLSPTHEEKYGKILAKYMLDKSNLFVISSDFCHWGKRFRYTYY---DEKF 584
+ P++V + S + G IL++Y+ D +NLF++SSDFCHWG+RF+YT Y E+
Sbjct: 160 TVKVFPMMVSHNSVDVDRCIGNILSEYIKDPNNLFIVSSDFCHWGRRFQYTGYVGSKEEL 219
Query: 585 GE-----------------------IWKSIENLDRMGMDAV-ESLDPEKFNS---YLQQY 683
+ IW+SIE +DR M + ++ + E++++ YL+
Sbjct: 220 NDAIQEETEVEMLTARSKLSHHQVPIWQSIEIMDRYAMKTLSDTPNGERYDAWKQYLEIT 279
Query: 684 HNTICG 701
NTICG
Sbjct: 280 GNTICG 285
>sp|O59292|Y1626_PYRHO Hypothetical UPF0103 protein PH1626
Length = 291
Score = 90.5 bits (223), Expect = 4e-18
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 2/203 (0%)
Frame = +3
Query: 99 ITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPFYNLP 278
+ PHAGY +SG TA YK I + VF++ +H G L E+ TP ++
Sbjct: 42 VAPHAGYVFSGFTASRTYKAIYEDGLPEVFVIFGPNHTGLGSPIALYPEGEWITPMGSIK 101
Query: 279 IDKKIYSELLATNNFGQAKCNHDEDEHSLEMQLPYVAKIMESRKGQFTIIPIIVGNLSPT 458
+D K E++ + + EHS+E+QLP++ I E + I+PI +G
Sbjct: 102 VDSKFAKEIVKRSGIADLDDLAHKYEHSIEVQLPFIQYIAEKAGVEVKIVPITLGIQDEE 161
Query: 459 HEEKYGKIL--AKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFGEIWKSIENLDRMGMD 632
G+ + A L + + + S+DF H+G + Y + + E+ + + D +
Sbjct: 162 VSRSLGRSIFEASTSLGRDTIIIASTDFMHYGSFYGYVPFRGRPEELPNMVRDWDMRIIR 221
Query: 633 AVESLDPEKFNSYLQQYHNTICG 701
+ D + S +++ ++T+CG
Sbjct: 222 RILDFDLDGMFSEIREMNHTMCG 244
>sp|O67039|Y890_AQUAE Hypothetical UPF0103 protein AQ_890
Length = 267
Score = 88.2 bits (217), Expect = 2e-17
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 4/208 (1%)
Frame = +3
Query: 90 RAIITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPFY 269
+AI+ PHAGY YSG TA YK+I+ E+V +LGP +H G+ + + D +ETP+
Sbjct: 39 KAILVPHAGYIYSGKTACEVYKRIEIP--EKVVLLGP-NHTGLGKPISVYSGDAWETPYG 95
Query: 270 NLPIDKKIYSELLATNNFGQAKCNHDE----DEHSLEMQLPYVAKIMESRKGQFTIIPII 437
+ ID ++ ++L N DE EHSLE+QLP++ + + +F I+PI+
Sbjct: 96 VVEIDGELREKILK-----YPYANPDEYAHLYEHSLEVQLPFLQRY---ARREFKILPIV 147
Query: 438 VGNLSPTHEEKYGKILAKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFGEIWKSIENLD 617
V + + +G+ L + + ++ L VISSD H+ + D
Sbjct: 148 VTFVEYEVAKDFGRFLGEVLKEEDALIVISSDMSHYVPA--------------EEARKKD 193
Query: 618 RMGMDAVESLDPEKFNSYLQQYHNTICG 701
+ + A+E L+ E+ QY+ T+CG
Sbjct: 194 EILISAMERLNTEELYFKAVQYNITMCG 221
>sp|Q9V189|Y539_PYRAB Hypothetical UPF0103 protein PYRAB05390
Length = 291
Score = 86.7 bits (213), Expect = 6e-17
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 2/203 (0%)
Frame = +3
Query: 99 ITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPFYNLP 278
+ PHAGY +SG TA YK I + F++ +H G + ++ TP +
Sbjct: 42 VAPHAGYVFSGYTASRTYKAIYEDGLPETFVIFGPNHTGLGSPIAVYPEGDWVTPLGKVK 101
Query: 279 IDKKIYSELLATNNFGQAKCNHDEDEHSLEMQLPYVAKIMESRKGQFTIIPIIVGNLSPT 458
ID ++ E++ + + EHS+E+QLP++ I E F I+PI +G
Sbjct: 102 IDSELAKEIVKLSKIADLDDLAHKYEHSIEVQLPFIQYIAEKAGTDFRIVPITLGIQDED 161
Query: 459 HEEKYGKIL--AKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFGEIWKSIENLDRMGMD 632
E G+ + A L + + + S+DF H+G + Y + + E+ ++ D +
Sbjct: 162 VSEALGRAVFEAAEALGRDVIVIASTDFMHYGSFYGYVPFRGRANELPNMVKEWDMRIIR 221
Query: 633 AVESLDPEKFNSYLQQYHNTICG 701
+ D + +++ +T+CG
Sbjct: 222 RILDFDLKGMFEEIREMDHTMCG 244
>sp|Q8U0F2|YG38_PYRFU Hypothetical UPF0103 protein PF1638
Length = 292
Score = 86.3 bits (212), Expect = 7e-17
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 2/203 (0%)
Frame = +3
Query: 99 ITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPFYNLP 278
+ PHAGY +SG TA YK I + VF++ +H G + E+ETP +
Sbjct: 42 VAPHAGYIFSGYTASRTYKAIYEDGLPEVFVILGPNHTGLGSPIAVYPKGEWETPLGRIK 101
Query: 279 IDKKIYSELLATNNFGQAKCNHDEDEHSLEMQLPYVAKIMESRKGQFTIIPIIVGNLSPT 458
+D+K+ + + + EHS+E+QLP++ + E I+PI +G
Sbjct: 102 VDEKLARRITELSEIADLDDLAHKYEHSIEVQLPFIQYLAELSGKDVKIVPITLGIQDEE 161
Query: 459 HEEKYGKIL--AKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFGEIWKSIENLDRMGMD 632
GK + A L + + + S+DF H+G+ + Y + + E+ ++ D +
Sbjct: 162 VSYALGKAIYEASQELGRDIVVIASTDFMHYGEFYGYVPFRARADELPNLVKEWDMRVIR 221
Query: 633 AVESLDPEKFNSYLQQYHNTICG 701
+ D E + ++T+CG
Sbjct: 222 RILDFDVEGMFEEINAMNHTMCG 244
>sp|Q9HLJ1|Y237_THEAC Hypothetical UPF0103 protein Ta0237
Length = 268
Score = 76.6 bits (187), Expect = 6e-14
Identities = 55/201 (27%), Positives = 95/201 (47%)
Frame = +3
Query: 99 ITPHAGYTYSGSTAGFAYKQIDPSQIERVFILGPSHHVSYGENCVLSNFDEYETPFYNLP 278
+ PHAG YSG TA ++Y+ I+ S + I+GP+H L E+ TP +
Sbjct: 41 VVPHAGIIYSGRTAMYSYRAIEKSAVRDFVIIGPNHR-PLTPYASLYPEGEWSTPLGDAL 99
Query: 279 IDKKIYSELLATNNFGQAKCNHDEDEHSLEMQLPYVAKIMESRKGQFTIIPIIVGNLSPT 458
I+ ++ L +N+ EHS+E+Q+P++ + F +P+I+G+
Sbjct: 100 INDRMAEALYRDSNYIVKDEESHLMEHSVEVQIPFLQYLFGD---GFRFVPVILGDQEID 156
Query: 459 HEEKYGKILAKYMLDKSNLFVISSDFCHWGKRFRYTYYDEKFGEIWKSIENLDRMGMDAV 638
G+ + K ++ +F+ SSDF H+ E K +E D + A+
Sbjct: 157 VARDIGEAIMK--IEDPFIFIASSDFTHY--------------EDAKRVEKKDMDLISAI 200
Query: 639 ESLDPEKFNSYLQQYHNTICG 701
+LD +KF S L++ + T CG
Sbjct: 201 LTLDLDKFYSVLEKENVTACG 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,934,560
Number of Sequences: 369166
Number of extensions: 1732901
Number of successful extensions: 4310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4272
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)