Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_M20
(602 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 408 e-114
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 406 e-113
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 406 e-113
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 405 e-113
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 405 e-113
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 404 e-113
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 404 e-113
sp|P52273|TBA_BOMMO Tubulin alpha chain 404 e-112
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 404 e-112
sp|P02550|TBA_PIG Tubulin alpha chain 404 e-112
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 408 bits (1048), Expect = e-114
Identities = 196/200 (98%), Positives = 200/200 (100%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 406 bits (1044), Expect = e-113
Identities = 195/200 (97%), Positives = 199/200 (99%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 406 bits (1043), Expect = e-113
Identities = 195/200 (97%), Positives = 200/200 (100%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 405 bits (1042), Expect = e-113
Identities = 194/200 (97%), Positives = 200/200 (100%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 405 bits (1041), Expect = e-113
Identities = 195/200 (97%), Positives = 200/200 (100%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 404 bits (1039), Expect = e-113
Identities = 194/200 (97%), Positives = 198/200 (99%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 404 bits (1039), Expect = e-113
Identities = 194/200 (97%), Positives = 200/200 (100%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY
Sbjct: 213 CRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 404 bits (1037), Expect = e-112
Identities = 194/200 (97%), Positives = 198/200 (99%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIE PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY
Sbjct: 213 CRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 404 bits (1037), Expect = e-112
Identities = 193/200 (96%), Positives = 199/200 (99%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEFA+YPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSV+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKR+IQFVDWCPTGFK
Sbjct: 333 ATIKTKRSIQFVDWCPTGFK 352
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 404 bits (1037), Expect = e-112
Identities = 193/200 (96%), Positives = 199/200 (99%)
Frame = +2
Query: 2 LMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 181
LMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI
Sbjct: 153 LMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 212
Query: 182 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATY 361
CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR HFPLATY
Sbjct: 213 CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATY 272
Query: 362 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASI 541
APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+I
Sbjct: 273 APVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAI 332
Query: 542 ATIKTKRTIQFVDWCPTGFK 601
ATIKTKRTIQFVDWCPTGFK
Sbjct: 333 ATIKTKRTIQFVDWCPTGFK 352
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,180,472
Number of Sequences: 369166
Number of extensions: 1483334
Number of successful extensions: 4034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3971
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)