Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_M05
(744 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondria... 383 e-106
sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isofor... 383 e-106
sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial ... 383 e-106
sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondria... 382 e-106
sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondria... 382 e-106
sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondria... 380 e-105
sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondria... 325 6e-89
sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondria... 322 9e-88
sp|P37211|ATPA_NEUCR ATP synthase alpha chain, mitochondria... 320 3e-87
sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondria... 320 3e-87
>sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 383 bits (984), Expect = e-106
Identities = 195/229 (85%), Positives = 213/229 (93%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GGGSLTALPVIETQAGDVSAYIPT
Sbjct: 324 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPT 383
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT+AMKQVAG MKLELAQYREV
Sbjct: 384 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV 443
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAIE+Q+ VIYAGVRGYLDK++PSK
Sbjct: 444 AAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSK 503
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFE 692
ITKFE +L +V+ HQ LL +IR G ISE +DAK+K+IVT+F+A FE
Sbjct: 504 ITKFENAFLSHVISQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGFE 552
>sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isoform, mitochondrial precursor
Length = 553
Score = 383 bits (983), Expect = e-106
Identities = 195/229 (85%), Positives = 212/229 (92%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GGGSLTALPVIETQAGDVSAYIPT
Sbjct: 324 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPT 383
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT+AMKQVAG MKLELAQYREV
Sbjct: 384 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV 443
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAIE+Q+ VIYAGVRGYLDK++PSK
Sbjct: 444 AAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSK 503
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFE 692
ITKFE +L +V+ HQ LL IR G ISE +DAK+K+IVT+F+A FE
Sbjct: 504 ITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFE 552
>sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial precursor
Length = 543
Score = 383 bits (983), Expect = e-106
Identities = 195/229 (85%), Positives = 213/229 (93%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GGGSLTALPVIETQAGDVSAYIPT
Sbjct: 314 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPT 373
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT+AMKQVAG MKLELAQYREV
Sbjct: 374 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV 433
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAIE+Q+ VIYAGVRGYLDK++PSK
Sbjct: 434 AAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSK 493
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFE 692
ITKFE +L +V+ HQ LL +IR G ISE +DAK+K+IVT+F+A FE
Sbjct: 494 ITKFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGFE 542
>sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondrial precursor (Protein
bellwether)
Length = 552
Score = 382 bits (980), Expect = e-106
Identities = 195/230 (84%), Positives = 212/230 (92%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS GGGSLTALPVIETQAGDVSAYIPT
Sbjct: 323 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPAMGGGSLTALPVIETQAGDVSAYIPT 382
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAG MKLELAQYREV
Sbjct: 383 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREV 442
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+TQQLLNRGVRLTELLKQGQYVPMAIEDQ+ VIY GVRG+LDKMDP+K
Sbjct: 443 AAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDPAK 502
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFEG 695
ITKFE+E+L+++ + Q LL I + G ISEA+DAK+K IV F+++F+G
Sbjct: 503 ITKFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTFQG 552
>sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 382 bits (980), Expect = e-106
Identities = 195/229 (85%), Positives = 212/229 (92%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GGGSLTALPVIETQAGDVSAYIPT
Sbjct: 324 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPT 383
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT+AMKQVAG MKLELAQYREV
Sbjct: 384 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV 443
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAIE+Q+ VIYAGVRGYLDK++PSK
Sbjct: 444 AAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSK 503
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFE 692
ITKFE +L +V+ HQ LL IR G ISE +DAK+K+IVT+F+A FE
Sbjct: 504 ITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGFE 552
>sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 380 bits (976), Expect = e-105
Identities = 195/229 (85%), Positives = 212/229 (92%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GGGSLTALPVIETQAGDVSAYIPT
Sbjct: 316 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDHFGGGSLTALPVIETQAGDVSAYIPT 375
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT+AMKQVAG MKLELAQYREV
Sbjct: 376 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV 435
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+TQQLLNRGVRLTELLKQGQYVPMAIE+Q+ VIYAGVRG+LDKM+PSK
Sbjct: 436 AAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVTVIYAGVRGHLDKMEPSK 495
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFE 692
ITKFE +L +V HQ+LL IR G ISE DAK+K+IV +F+++FE
Sbjct: 496 ITKFESAFLAHVKSQHQELLATIRADGKISEQADAKLKEIVLNFLSTFE 544
>sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondrial precursor
Length = 548
Score = 325 bits (834), Expect = 6e-89
Identities = 168/228 (73%), Positives = 191/228 (83%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
+SLLLRRPPGREAYPGDVFYLHSRLLERAAKMS+ GGGSLTALPVIETQ GDVSAYIPT
Sbjct: 321 LSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSEKNGGGSLTALPVIETQGGDVSAYIPT 380
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLE ELFYKGIRPAINVGLSVSRVGSAAQ KA+KQVAG +KL LAQYREV
Sbjct: 381 NVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREV 440
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDAST+Q L RG RLT+LLKQ QY P+A E+Q+ +IYAGV GYLD +D S+
Sbjct: 441 AAFAQFGSDLDASTKQTLARGERLTQLLKQNQYSPLAAEEQVPLIYAGVNGYLDNIDISR 500
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASF 689
I +FE ++L + NH +++ IRE G +S+ A +K FVA+F
Sbjct: 501 IAEFETKFLAYLKANHDEIVSAIREKGELSKELLATLKSATESFVATF 548
>sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondrial precursor
Length = 536
Score = 322 bits (824), Expect = 9e-88
Identities = 159/228 (69%), Positives = 197/228 (86%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS +GGGSLTALPVIETQ GDVSAYIPT
Sbjct: 309 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPT 368
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLE+ELF+KGIRPAINVGLSVSRVGSAAQ KAMKQVAG++KL LAQYREV
Sbjct: 369 NVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREV 428
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
A+FAQFGSDLDA T+ L+RG+RLTELLKQ QY P+A+E+Q+ +IY GV+GYLDK+ +
Sbjct: 429 ASFAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDR 488
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASF 689
+ +FE +++ + + ++++ IR+ GV+S+ + +K ++ +F++SF
Sbjct: 489 VVEFEHKFIPYLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLSSF 536
>sp|P37211|ATPA_NEUCR ATP synthase alpha chain, mitochondrial precursor
Length = 551
Score = 320 bits (819), Expect = 3e-87
Identities = 161/230 (70%), Positives = 193/230 (83%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
MSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+ +GGGS+TALPVIETQ GDVSAYIPT
Sbjct: 322 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNKTHGGGSMTALPVIETQGGDVSAYIPT 381
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLE+ELFYKG+RPAINVGLSVSRVGSAAQ KAMKQVAG +KL LAQYREV
Sbjct: 382 NVISITDGQIFLESELFYKGVRPAINVGLSVSRVGSAAQLKAMKQVAGSLKLFLAQYREV 441
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDA+T+Q LNRG RLTELLKQ QY PMA+ + + +I+AGV G+LD + +K
Sbjct: 442 AAFAQFGSDLDAATKQTLNRGERLTELLKQKQYSPMAVNEMVPLIFAGVNGFLDSVPVAK 501
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASFEG 695
I ++E ++L ++ N +++ I + G IS+ +AK++ ++ F SF G
Sbjct: 502 ILQWEADFLAHLKTNEPEIMATIDKEGAISKDLEAKLRDVIQTFTKSFLG 551
>sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 320 bits (819), Expect = 3e-87
Identities = 166/228 (72%), Positives = 190/228 (83%)
Frame = +3
Query: 6 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGGGSLTALPVIETQAGDVSAYIPT 185
+SLLLRRPPGREAYPGDVFYLHSRLLERAAK+S+ G GSLTALPVIETQ GDVSAYIPT
Sbjct: 318 LSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPT 377
Query: 186 NVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGRMKLELAQYREV 365
NVISITDGQIFLE ELFYKGIRPAINVGLSVSRVGSAAQ KA+KQVAG +KL LAQYREV
Sbjct: 378 NVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREV 437
Query: 366 AAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAIEDQIVVIYAGVRGYLDKMDPSK 545
AAFAQFGSDLDAST+Q L RG RLT+LLKQ QY P+A E+Q+ +IYAGV G+LD ++ S+
Sbjct: 438 AAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSR 497
Query: 546 ITKFEQEYLKNVLVNHQDLLKDIRESGVISEANDAKMKKIVTDFVASF 689
I +FE +L + NH +LL +IRE G +S+ A +K FVA+F
Sbjct: 498 IGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,815,966
Number of Sequences: 369166
Number of extensions: 1536219
Number of successful extensions: 4275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4187
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)