Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_L20-2
(388 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q64422|GNPI_MESAU Glucosamine-6-phosphate isomerase (Glu... 164 4e-41
sp|O88958|GNPI_MOUSE Glucosamine-6-phosphate isomerase (Glu... 163 1e-40
sp|P46926|GNPI_HUMAN Glucosamine-6-phosphate isomerase (Glu... 163 1e-40
sp|Q5R8T8|GNPI_PONPY Glucosamine-6-phosphate isomerase (Glu... 163 1e-40
sp|Q9XVJ2|GNPI_CAEEL Probable glucosamine-6-phosphate isome... 136 1e-32
sp|Q8REG1|NAGB_FUSNN Glucosamine-6-phosphate deaminase (Glu... 124 5e-29
sp|P0A759|NAGB_ECOLI Glucosamine-6-phosphate deaminase (Glu... 121 4e-28
sp|Q8FJX7|NAGB_ECOL6 Glucosamine-6-phosphate deaminase (Glu... 121 4e-28
sp|P59688|NAGB_SHIFL Glucosamine-6-phosphate deaminase (Glu... 120 7e-28
sp|O30564|NAGB_BORBU Glucosamine-6-phosphate deaminase (Glu... 119 2e-27
>sp|Q64422|GNPI_MESAU Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate
deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)
Length = 289
Score = 164 bits (416), Expect = 4e-41
Identities = 79/102 (77%), Positives = 93/102 (91%)
Frame = -1
Query: 388 AQETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNH 209
A +TI AN+RFF+ DL+KVPT ALTVGVGTVM+AREV+ILITG+ KA AL+KAIEEGVNH
Sbjct: 163 AMDTILANARFFDGDLAKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNH 222
Query: 208 MWTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
MWTVSAFQQHP+T+FV DEDATLELK+KTV+YFKGL ++H K
Sbjct: 223 MWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNK 264
>sp|O88958|GNPI_MOUSE Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate
deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)
Length = 289
Score = 163 bits (413), Expect = 1e-40
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = -1
Query: 388 AQETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNH 209
A +TI AN+RFF+ DL+KVPT ALTVGVGTVM+A+EV+ILITG+ KA AL+KAIEEGVNH
Sbjct: 163 AMDTILANARFFDGDLAKVPTMALTVGVGTVMDAKEVMILITGAHKAFALYKAIEEGVNH 222
Query: 208 MWTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
MWTVSAFQQHP+T+FV DEDATLELK+KTV+YFKGL ++H K
Sbjct: 223 MWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNK 264
>sp|P46926|GNPI_HUMAN Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate
deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)
Length = 289
Score = 163 bits (412), Expect = 1e-40
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = -1
Query: 388 AQETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNH 209
A +TI AN+RFF+ +L+KVPT ALTVGVGTVM+AREV+ILITG+ KA AL+KAIEEGVNH
Sbjct: 163 AMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNH 222
Query: 208 MWTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
MWTVSAFQQHP+T+FV DEDATLELK+KTV+YFKGL ++H K
Sbjct: 223 MWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNK 264
>sp|Q5R8T8|GNPI_PONPY Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate
deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin)
Length = 289
Score = 163 bits (412), Expect = 1e-40
Identities = 78/102 (76%), Positives = 93/102 (91%)
Frame = -1
Query: 388 AQETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNH 209
A +TI AN+RFF+ +L+KVPT ALTVGVGTVM+AREV+ILITG+ KA AL+KAIEEGVNH
Sbjct: 163 AMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNH 222
Query: 208 MWTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
MWTVSAFQQHP+T+FV DEDATLELK+KTV+YFKGL ++H K
Sbjct: 223 MWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNK 264
>sp|Q9XVJ2|GNPI_CAEEL Probable glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate
deaminase) (GNPDA) (GlcN6P deaminase)
Length = 267
Score = 136 bits (343), Expect = 1e-32
Identities = 68/95 (71%), Positives = 82/95 (86%)
Frame = -1
Query: 385 QETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNHM 206
++TIQAN+RFF D++KVPT+ALTVGV TVM+AREV+ILITGS KALALH+AIE G++HM
Sbjct: 163 EDTIQANARFFGGDITKVPTQALTVGVQTVMDAREVMILITGSHKALALHQAIECGISHM 222
Query: 205 WTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGL 101
TVSA Q H F+ DEDATLELK+KTV+YFKGL
Sbjct: 223 CTVSAMQMHRCATFIADEDATLELKVKTVKYFKGL 257
>sp|Q8REG1|NAGB_FUSNN Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
Length = 274
Score = 124 bits (312), Expect = 5e-29
Identities = 57/95 (60%), Positives = 73/95 (76%)
Frame = -1
Query: 385 QETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNHM 206
++TI NSRFF ND++KVP ALTVGV T+M+A+EVLI++ G+ KA ALH IEEG+NHM
Sbjct: 163 EDTIIVNSRFFNNDITKVPQSALTVGVSTIMDAKEVLIMVEGNNKARALHMGIEEGINHM 222
Query: 205 WTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGL 101
WT+SA Q H K I V DEDA ELK+ T +Y+K +
Sbjct: 223 WTISALQLHEKAIIVADEDACAELKVATYKYYKDI 257
>sp|P0A759|NAGB_ECOLI Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
sp|P0A760|NAGB_ECO57 Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
Length = 266
Score = 121 bits (304), Expect = 4e-28
Identities = 59/100 (59%), Positives = 76/100 (76%)
Frame = -1
Query: 382 ETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNHMW 203
+T ANSRFF+ND+++VP ALTVGVGT+++A EV+IL+ GS KALAL A+E VNHMW
Sbjct: 165 DTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMW 224
Query: 202 TVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
T+S Q HPK I V DE +T+ELK+KT+RYF L + K
Sbjct: 225 TISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIK 264
>sp|Q8FJX7|NAGB_ECOL6 Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
Length = 266
Score = 121 bits (304), Expect = 4e-28
Identities = 59/100 (59%), Positives = 76/100 (76%)
Frame = -1
Query: 382 ETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNHMW 203
+T ANSRFF+ND+++VP ALTVGVGT+++A EV+IL+ GS KALAL A+E VNHMW
Sbjct: 165 DTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMW 224
Query: 202 TVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
T+S Q HPK I V DE +T+ELK+KT+RYF L + K
Sbjct: 225 TISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIK 264
>sp|P59688|NAGB_SHIFL Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
Length = 266
Score = 120 bits (302), Expect = 7e-28
Identities = 58/100 (58%), Positives = 76/100 (76%)
Frame = -1
Query: 382 ETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNHMW 203
+T ANSRFF+ND+++VP ALTVGVGT+++A EV+I++ GS KALAL A+E VNHMW
Sbjct: 165 DTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMIMVLGSQKALALQAAVEGCVNHMW 224
Query: 202 TVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGLNVLHTK 83
T+S Q HPK I V DE +T+ELK+KT+RYF L + K
Sbjct: 225 TISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIK 264
>sp|O30564|NAGB_BORBU Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
Length = 268
Score = 119 bits (299), Expect = 2e-27
Identities = 57/95 (60%), Positives = 73/95 (76%)
Frame = -1
Query: 385 QETIQANSRFFENDLSKVPTKALTVGVGTVMEAREVLILITGSTKALALHKAIEEGVNHM 206
Q+TI ANSRFFE D++KVP ALTVG+GT+M+++EVLI++ G KA AL AIE+GVNHM
Sbjct: 164 QDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHM 223
Query: 205 WTVSAFQQHPKTIFVVDEDATLELKMKTVRYFKGL 101
WT+SA Q H I V D++AT ELK+ TV YF +
Sbjct: 224 WTISALQLHKNAIIVSDKNATYELKVGTVEYFNDI 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,537,760
Number of Sequences: 369166
Number of extensions: 602447
Number of successful extensions: 1828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)