Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_L09
(800 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86Y82|STX12_HUMAN Syntaxin-12 66 1e-10
sp|O15400|STX7_HUMAN Syntaxin-7 65 2e-10
sp|Q9ER00|STX12_MOUSE Syntaxin-12 65 2e-10
sp|O70257|STX7_RAT Syntaxin-7 65 3e-10
sp|O70439|STX7_MOUSE Syntaxin-7 64 6e-10
sp|Q20574|STX2_CAEEL Putative syntaxin syn-2 57 6e-08
sp|P39926|SSO2_YEAST SSO2 protein 55 2e-07
sp|P32867|SSO1_YEAST SSO1 protein 54 6e-07
sp|O64791|S124_ARATH Putative syntaxin 124 (AtSYP124) 43 0.001
sp|P51834|SMC_BACSU Chromosome partition protein smc 43 0.001
>sp|Q86Y82|STX12_HUMAN Syntaxin-12
Length = 276
Score = 66.2 bits (160), Expect = 1e-10
Identities = 49/224 (21%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Frame = +3
Query: 45 NLVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRAKDLLFLTKSLFDS 224
+++ + N Q+I Q T ++ +L +G DS + L QLQ L T L
Sbjct: 24 SIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKE 83
Query: 225 ISHLKIADESS-----RLTITKVKEEYNMIIPKYNEIHEKIIAKMTQMALEARQS--LSL 383
+ L + +S RL ++ +++ + + + ++ K + AR LS
Sbjct: 84 LGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARARAGSRLSA 143
Query: 384 VEPIKDDEFSDMNS-----QMTRDQEEINAAEEMMNRMK-------QLENNLVVAEQLFT 527
E ++++ +S QM ++E+ E+ + +K QLE +++ Q+F
Sbjct: 144 EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLELIKERETAIRQLEADILDVNQIFK 203
Query: 528 EINKIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
++ ++ + + ++ IE+NVES+ V+ ++LQ A Y++K+
Sbjct: 204 DLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQKKS 247
>sp|O15400|STX7_HUMAN Syntaxin-7
Length = 261
Score = 65.5 bits (158), Expect = 2e-10
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Frame = +3
Query: 48 LVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRAKDLLFLTKSLFDSI 227
L RI++N Q+I Q + E+ +G P DSP R +L Q Q L T
Sbjct: 14 LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEF 73
Query: 228 SHLKIADESSR---LTITKVKEEYNMIIPKYNEIHEKIIAKMTQMALEARQSLSLVEPIK 398
L R + ++ E+ + + ++ + + + R S +
Sbjct: 74 GSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFP 133
Query: 399 DDEFSDMN----SQMTRDQEEINAAE----------EMMNRMKQLENNLVVAEQLFTEIN 536
+D + N T+ Q ++ E E + ++QLE +++ ++F ++
Sbjct: 134 EDSSKERNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLG 193
Query: 537 KIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
++ E + ++ IE+NVE+A V NQ+L A Y++K+
Sbjct: 194 MMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKS 234
>sp|Q9ER00|STX12_MOUSE Syntaxin-12
Length = 274
Score = 65.1 bits (157), Expect = 2e-10
Identities = 51/224 (22%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Frame = +3
Query: 45 NLVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRAKDLLFLTKSLFDS 224
+++ + N Q+I Q T ++ +L +G DS + L QLQ L T L
Sbjct: 24 SIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKE 83
Query: 225 ISHLKIADESSRLTITKVKEE------------YNMIIPKYNEIHEKIIAKM---TQMAL 359
+ L + +S K+++E + ++ K +E ++ IA+ ++++
Sbjct: 84 LGSLPLPLSASEQRQQKLQKERLMNDFSSALNNFQVVQRKVSEKEKESIARARAGSRLSA 143
Query: 360 EARQ-SLSLVEPIKDDEFSDMNSQMTR---DQEEINAAEEMMNRMKQLENNLVVAEQLFT 527
E RQ LV +E++ M SQ ++++ +E ++QLE +++ Q+F
Sbjct: 144 EDRQREEQLVSFDSHEEWNQMQSQEEEAAITEQDLELIKERETAIRQLEADILDVNQIFK 203
Query: 528 EINKIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
++ ++ + + ++ IE+NVES+ V+ +LQ A Y++K+
Sbjct: 204 DLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKS 247
>sp|O70257|STX7_RAT Syntaxin-7
Length = 261
Score = 64.7 bits (156), Expect = 3e-10
Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 17/221 (7%)
Frame = +3
Query: 48 LVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRAKDLLFLTKSLFDSI 227
L RI++N Q+I Q + E+ +G P D+P R +L Q Q L T
Sbjct: 14 LAQRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEF 73
Query: 228 SHLKIADESSR---LTITKVKEEYNMIIPKYNEIHEKIIAKMTQMALEARQSLSLVEPIK 398
L R + ++ E+ + + ++ + + + R S +
Sbjct: 74 GFLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRVSGGFP 133
Query: 399 DDE-----FSDMNSQ-----MTRDQE----EINAAEEMMNRMKQLENNLVVAEQLFTEIN 536
+D F SQ +D+E ++ E + ++QLE +++ ++F ++
Sbjct: 134 EDSSKAKNFVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLG 193
Query: 537 KIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
++ E + ++ IE+NVESA V NQ+L A Y++K+
Sbjct: 194 MMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKS 234
>sp|O70439|STX7_MOUSE Syntaxin-7
Length = 261
Score = 63.5 bits (153), Expect = 6e-10
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 17/221 (7%)
Frame = +3
Query: 48 LVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRAKDLLFLTKSLFDSI 227
L RI++N Q+I Q + E+ +G P DSP R L Q Q L T
Sbjct: 14 LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEF 73
Query: 228 SHLKIADESSR---LTITKVKEEYNMIIPKYNEIHEKIIAKMTQMALEARQSLSLVEPIK 398
L R + ++ E+ + + + + + + R S +
Sbjct: 74 GSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRASSRVSGGFP 133
Query: 399 DDEFSDMN----SQMTRDQEEINAAE----------EMMNRMKQLENNLVVAEQLFTEIN 536
+D + N T+ Q ++ E E + ++QLE +++ ++F ++
Sbjct: 134 EDSSKEKNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLG 193
Query: 537 KIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
++ E + ++ IE+NVESA V NQ+L A Y++K+
Sbjct: 194 MMIHEQGDMIDSIEANVESAEVHVQQANQQLSRAADYQRKS 234
>sp|Q20574|STX2_CAEEL Putative syntaxin syn-2
Length = 299
Score = 57.0 bits (136), Expect = 6e-08
Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 21/230 (9%)
Frame = +3
Query: 33 ETVQNLVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRAKDLLFLTKS 212
E V+N + + +++R+ + + L + P D N++ ++ R DL L +
Sbjct: 38 EEVRNAIASVRGEIEKLRRDQQHV--LALTIADPRDKNILENQIGTIRRRTGDLRKLVRQ 95
Query: 213 LFDSISHL-----KIADESSRLT-ITKVKEEYNMIIPKYNEIHEKIIAKMTQMALEARQS 374
D + ++ R + +K+ N +I +NE H+ +++++ R+
Sbjct: 96 AEDDFLEFTKQVQSVTEKRMRQNQLELLKDNLNKLINLFNETHQDY---KSRVSVRVRRQ 152
Query: 375 LSLVEPIKDDE---------------FSDMNSQMTRDQEEINAAEEMMNRMKQLENNLVV 509
L V DE F ++N Q ++ +K LENN+ +
Sbjct: 153 LQTVGQDLTDEDINRIMENSGSEQLFFREVNPLSVSGQAAYEDVKKRHGEIKDLENNIAM 212
Query: 510 AEQLFTEINKIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
E++F ++ + E V I++NVE+ V G+ ++ A YK+ A
Sbjct: 213 LEEIFLDLQHLTEAQDEMVTNIDNNVENGLEQVKQGSANVKTAVEYKKSA 262
>sp|P39926|SSO2_YEAST SSO2 protein
Length = 295
Score = 55.1 bits (131), Expect = 2e-07
Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 17/235 (7%)
Frame = +3
Query: 6 GSIDSVDSKETVQNLVLRITNNFQQIRQITKELNDLYQIMGGPHDSPARRNKLLQLQTRA 185
GS D V + ++ ++ I QI + DL + + RR+ L ++A
Sbjct: 33 GSDDFVAFMNKINSINANLSRYENIINQIDAQHKDLLTQVSEEQEMELRRS-LDDYISQA 91
Query: 186 KDLLFLTKSLFDSISHLKIADESSRLTITKVKEEYNMIIPKYNEIHEKIIAKMTQMALEA 365
DL + K+ + D + + ++++ +I Y I + + +A
Sbjct: 92 TDLQYQLKADIKDAQRDGLHDSNKQAQAENCRQKFLKLIQDYRIIDSNYKEESKE---QA 148
Query: 366 RQSLSLVEPIKDDE-----FSDMNSQMTRDQEEINA------------AEEMMNRMKQLE 494
++ ++++P DE +D+N Q Q +NA + + +LE
Sbjct: 149 KRQYTIIQPEATDEEVEAAINDVNGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLE 208
Query: 495 NNLVVAEQLFTEINKIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTYKQKA 659
+ QLF ++ ++V+E +E+V+ I+ NVE A DV+ G +A +KA
Sbjct: 209 KTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQQDVEQGVGHTNKAVKSARKA 263
>sp|P32867|SSO1_YEAST SSO1 protein
Length = 290
Score = 53.5 bits (127), Expect = 6e-07
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Frame = +3
Query: 153 RNKLLQLQTRAKDLLFLTKSLFDSISHLKIAD-------ESSRLTITKVKEEYNMIIPKY 311
R+ L +A DL F K+ S I D E+SR K+ ++Y ++ Y
Sbjct: 77 RHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNY 136
Query: 312 NEIHEKIIAKMTQMALEARQSLSLVEPIKDDE-----FSDMNSQMTRDQEEINAAEEMMN 476
E K AK M ++ + VE D FS R E A E+
Sbjct: 137 KE-ENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQA 195
Query: 477 RMKQL---ENNLVVAEQLFTEINKIVVECREDVEQIESNVESAYSDVDNGNQKLQEATTY 647
R ++L E ++ QLF ++ ++V+E +E+V+ I+ NVE A DV+ G +A
Sbjct: 196 RHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKS 255
Query: 648 KQKA 659
+KA
Sbjct: 256 ARKA 259
>sp|O64791|S124_ARATH Putative syntaxin 124 (AtSYP124)
Length = 303
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +3
Query: 444 EEINAAEEMMNRMKQLENNLVVAEQLFTEINKIVVECREDVEQIESNVESAYSDVDNGNQ 623
+ I+ +E + +K++E NL+ Q+F ++ +V + + IES+V A S V G
Sbjct: 201 DTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTD 260
Query: 624 KLQEATTYKQKA 659
+LQ+A Y++ +
Sbjct: 261 QLQDAREYQKSS 272
>sp|P51834|SMC_BACSU Chromosome partition protein smc
Length = 1186
Score = 42.7 bits (99), Expect = 0.001
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 3/193 (1%)
Frame = +3
Query: 81 IRQITKELNDLYQIMGGPH-DSPARRNKLLQLQTRAKDLLFLTKSLFDSISHLKIADESS 257
I+ + K+L DL + G + +L +LQ K++ + S L +DE
Sbjct: 707 IQDMEKKLADLRETGEGLRLKQQDVKGQLYELQVAEKNINTHLELYDQEKSALSESDEER 766
Query: 258 RLTITKVKEEYNMIIPKYNEIHEKI--IAKMTQMALEARQSLSLVEPIKDDEFSDMNSQM 431
++ K++EE + + K ++ E I + K Q ++SLS +E +++
Sbjct: 767 KVRKRKLEEELSAVSEKMKQLEEDIDRLTKQKQTQSSTKESLS-------NELTELKIAA 819
Query: 432 TRDQEEINAAEEMMNRMKQLENNLVVAEQLFTEINKIVVECREDVEQIESNVESAYSDVD 611
+ ++ E+ + R+K+ TE + E +ED+ + S + S+ S
Sbjct: 820 AKKEQACKGEEDNLARLKKE----------LTETELALKEAKEDLSFLTSEMSSSTS--- 866
Query: 612 NGNQKLQEATTYK 650
G +KL+EA +K
Sbjct: 867 -GEEKLEEAAKHK 878
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,974,053
Number of Sequences: 369166
Number of extensions: 1194963
Number of successful extensions: 4938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4912
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)