Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_K22
(308 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P95649|CBBY_RHOSH Protein cbbY 32 0.46
sp|P45443|DYHC_NEUCR Dynein heavy chain, cytosolic (DYHC) 31 0.78
sp|Q8VD04|GRAP1_MOUSE GRIP1-associated protein 1 (GRASP-1) ... 29 3.0
sp|Q7UI03|RL1_RHOBA 50S ribosomal protein L1 29 3.9
sp|P40059|DOT6_YEAST Disrupter of telomere silencing protein 6 29 3.9
sp|Q9XCX8|ERA_PSEAE GTP-binding protein era homolog 29 3.9
sp|Q53479|IDSA_METTM Bifunctional short chain isoprenyl dip... 28 5.0
sp|P20967|ODO1_YEAST 2-oxoglutarate dehydrogenase E1 compon... 28 5.0
sp|P30599|CHS2_USTMA Chitin synthase 2 (Chitin-UDP acetyl-g... 28 6.6
sp|Q9UNA1|RHG26_HUMAN Rho-GTPase-activating protein 26 (Oli... 28 8.6
>sp|P95649|CBBY_RHOSH Protein cbbY
Length = 230
Score = 32.0 bits (71), Expect = 0.46
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +2
Query: 5 EELAELIGDRG--KRVGEALQFHVNDLSHL--SDDHKVANKMMLNLWLEGKSSLTPSVAN 172
EE EL+ G +R+ L+ D + L +D H+ + + L EG+ +L P +A+
Sbjct: 40 EEYRELLTTTGGKERIARFLRHQKGDPAPLPIADIHRAKTERFVALMAEGEIALRPGIAD 99
Query: 173 LVAAFEEIGMDDIVLKIKSSWIVYLLCVA 259
L+A + G+ V S V LC A
Sbjct: 100 LIAEAKRAGIRLAVATTTSLPNVEALCRA 128
>sp|P45443|DYHC_NEUCR Dynein heavy chain, cytosolic (DYHC)
Length = 4367
Score = 31.2 bits (69), Expect = 0.78
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +2
Query: 56 LQFHVNDLSHLSDDHKVANKMMLNLWLEGKSSL----TPSVANLVAAFEEIGMDDIVLKI 223
LQ ++ + + D+H+ + ++N+ L K+++ T S AN VA EEIG D V ++
Sbjct: 490 LQSRLDYVHNFRDNHEQLQRTIINV-LGPKATVNGIVTASGANGVAVVEEIGDVDAVDEV 548
Query: 224 KSSW 235
K +W
Sbjct: 549 KQAW 552
>sp|Q8VD04|GRAP1_MOUSE GRIP1-associated protein 1 (GRASP-1) (HCMV-interacting protein)
Length = 806
Score = 29.3 bits (64), Expect = 3.0
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 5 EELAELIGDRGKRVGEALQFHVNDLSHLSDDHKVANKMMLNLWLEGKSSLTPSVANLVAA 184
+ LAEL R +R GE L+ H L L D + A LN+ E S L + + A
Sbjct: 286 QSLAEL---RDQRQGERLE-HAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAE 341
Query: 185 FEEI--GMDDIVLKIKSS 232
+EE+ DD+ +++ S
Sbjct: 342 YEELMGQKDDLNSQLQES 359
>sp|Q7UI03|RL1_RHOBA 50S ribosomal protein L1
Length = 225
Score = 28.9 bits (63), Expect = 3.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 179 AAFEEIGMDDIVLKIKSSWIVYLLCVA 259
A +E+G +D+ KIK W + +C+A
Sbjct: 89 AGADEVGQEDLAKKIKDGWTDFDVCIA 115
>sp|P40059|DOT6_YEAST Disrupter of telomere silencing protein 6
Length = 670
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 257 QHTIDILSMTT*S*ARYHPSRSPQMQQLDWRRMESG 150
+H ++ M ++Y P+R+P Q WRR++SG
Sbjct: 84 RHLKEVKKMGWKDISQYFPNRTPNACQFRWRRLKSG 119
>sp|Q9XCX8|ERA_PSEAE GTP-binding protein era homolog
Length = 305
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 20 LIGDRGKRVGEALQFHVNDLSHLSDDHKVANKMMLNLWLEGK 145
+IGD+G+R+ Q D+ L D +K+MLNLW++ K
Sbjct: 251 IIGDKGERIKSIGQNARKDMEVLFD-----SKVMLNLWVKVK 287
>sp|Q53479|IDSA_METTM Bifunctional short chain isoprenyl diphosphate synthase [Includes:
Farnesyl pyrophosphate synthetase (FPP synthetase)
(Dimethylallyltranstransferase); Geranyltranstransferase
]
Length = 325
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 5 EELAELIGDRGKRVGEALQFHVNDLSHLSDDHKVANKMMLNLWLEGKSSLTPSVANLVAA 184
E E + D GK +G A Q H + L +SD+ + + ++ EGK +L +V A
Sbjct: 193 EREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDI-AEGKMTLM-----VVKA 246
Query: 185 FEEIGMDD 208
EE +D
Sbjct: 247 LEEASEED 254
>sp|P20967|ODO1_YEAST 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor
(Alpha-ketoglutarate dehydrogenase)
Length = 1014
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 134 LEGKSSLTPSVANLVAAFEEIGMDDIVL 217
LEG S+ P + LV E+G++DIVL
Sbjct: 274 LEGLESVVPGIKTLVDRSVELGVEDIVL 301
>sp|P30599|CHS2_USTMA Chitin synthase 2 (Chitin-UDP acetyl-glucosaminyl transferase 2)
Length = 1074
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 164 VANLVAAFEEIGMDDIVLKIKSSWIVYLLC 253
V NL F+ G DIV+ + ++++++LLC
Sbjct: 852 VDNLETLFKTSGFRDIVISLAATYVMWLLC 881
>sp|Q9UNA1|RHG26_HUMAN Rho-GTPase-activating protein 26 (Oligophrenin-1-like protein)
(GTPase regulator associated with focal adhesion kinase)
Length = 814
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = +2
Query: 2 IEELAELIGDRGKRVGEALQFHVNDLSHLSDDHKVANKMMLNLWLEGKSSLTPSVANLVA 181
+ E+ L+ ++ + LQ +N L++++++HK + NL + +L VA
Sbjct: 486 VSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTLLRPQEETVA 545
Query: 182 AFEEIGMDDIVLKI 223
A +I +IV++I
Sbjct: 546 AIMDIKFQNIVIEI 559
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,273,428
Number of Sequences: 369166
Number of extensions: 601424
Number of successful extensions: 1475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)