Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_K21
(810 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eI... 285 1e-76
sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eI... 285 1e-76
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (eI... 285 1e-76
sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A... 284 2e-76
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I (eI... 283 3e-76
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (e... 283 4e-76
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (e... 283 4e-76
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A (eIF4A... 275 1e-73
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A... 270 3e-72
sp|P10081|IF4A_YEAST Eukaryotic initiation factor 4A (eIF4A... 264 2e-70
>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 285 bits (729), Expect = 1e-76
Identities = 143/195 (73%), Positives = 166/195 (85%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E++K +TL DLYETLT
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQAVIF NTRRKVD+LTE + A+ F VS+MHGDM Q RD IM+EFRSGSSR+LITTDL
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GVAIN VT++D RTL+D+E++Y
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 270 STHIEEMPMNIADLI 226
+T IEEMP+N+ADLI
Sbjct: 392 NTSIEEMPLNVADLI 406
>sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 285 bits (729), Expect = 1e-76
Identities = 143/195 (73%), Positives = 166/195 (85%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E++K +TL DLYETLT
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQAVIF NTRRKVD+LTE + A+ F VS+MHGDM Q RD IM+EFRSGSSR+LITTDL
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GVAIN VT++D RTL+D+E++Y
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 270 STHIEEMPMNIADLI 226
+T IEEMP+N+ADLI
Sbjct: 392 NTSIEEMPLNVADLI 406
>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 398
Score = 285 bits (729), Expect = 1e-76
Identities = 143/195 (73%), Positives = 166/195 (85%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E++K +TL DLYETLT
Sbjct: 204 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 263
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQAVIF NTRRKVD+LTE + A+ F VS+MHGDM Q RD IM+EFRSGSSR+LITTDL
Sbjct: 264 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 323
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GVAIN VT++D RTL+D+E++Y
Sbjct: 324 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 383
Query: 270 STHIEEMPMNIADLI 226
+T IEEMP+N+ADLI
Sbjct: 384 NTSIEEMPLNVADLI 398
>sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 392
Score = 284 bits (726), Expect = 2e-76
Identities = 141/195 (72%), Positives = 164/195 (84%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT KFMR P++ILVKK+ELTLEGI+QFYV V +E++K +TL DLYET+T
Sbjct: 198 LSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVT 257
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
+TQAVIFCNTRRKVD+LTE L + F VSSMHGDM Q RD +M EFR+GSSRILITTDL
Sbjct: 258 VTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDL 317
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GV+INFVT DD+R ++++E +Y
Sbjct: 318 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFY 377
Query: 270 STHIEEMPMNIADLI 226
+THIEEMPMNIADLI
Sbjct: 378 NTHIEEMPMNIADLI 392
>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 283 bits (725), Expect = 3e-76
Identities = 142/195 (72%), Positives = 165/195 (84%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E++K +TL DLYETLT
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQAVIF NTRRKVD+LTE + A+ F S+MHGDM Q RD IM+EFRSGSSR+LITTDL
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GVAIN VT++D RTL+D+E++Y
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391
Query: 270 STHIEEMPMNIADLI 226
+T IEEMP+N+ADLI
Sbjct: 392 NTSIEEMPLNVADLI 406
>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
sp|Q5R4X1|IF4A2_PONPY Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
Length = 407
Score = 283 bits (724), Expect = 4e-76
Identities = 141/195 (72%), Positives = 166/195 (85%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT+KFMR P++ILVKKEELTLEGI+QFY+NV E++K +TL DLYETLT
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQAVIF NTRRKVD+LTE + A+ F VS++HGDM Q RD IM+EFRSGSSR+LITTDL
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GVAINFVT++D R L+D+E++Y
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFY 392
Query: 270 STHIEEMPMNIADLI 226
+T +EEMPMN+ADLI
Sbjct: 393 NTTVEEMPMNVADLI 407
>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
Length = 408
Score = 283 bits (724), Expect = 4e-76
Identities = 141/195 (72%), Positives = 166/195 (85%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT+KFMR P++ILVKKEELTLEGI+QFY+NV E++K +TL DLYETLT
Sbjct: 214 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 273
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQAVIF NTRRKVD+LTE + A+ F VS++HGDM Q RD IM+EFRSGSSR+LITTDL
Sbjct: 274 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 333
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+NRENYIH GVAINFVT++D R L+D+E++Y
Sbjct: 334 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFY 393
Query: 270 STHIEEMPMNIADLI 226
+T +EEMPMN+ADLI
Sbjct: 394 NTTVEEMPMNVADLI 408
>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 403
Score = 275 bits (703), Expect = 1e-73
Identities = 141/195 (72%), Positives = 160/195 (82%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMPPDVLEV+R FMR PV ILVKKEELTLEGI+QFYVNV +E++K TL DLY+TL+
Sbjct: 209 LSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLS 268
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
ITQ+VIFCNTRRKVD LT+ + F VS+MHGDM+Q R+ IMK+FRSGSSR+LITTDL
Sbjct: 269 ITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDL 328
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLPSNRENYIH GVAINF+T DD R L+D+E +Y
Sbjct: 329 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFY 388
Query: 270 STHIEEMPMNIADLI 226
T IEEMP NIADLI
Sbjct: 389 HTTIEEMPANIADLI 403
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 402
Score = 270 bits (691), Expect = 3e-72
Identities = 134/195 (68%), Positives = 161/195 (82%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP +VL+VT +FMR+P++ILVKK+ELTLEGIRQFY+NV ++++KF+ L DLY +
Sbjct: 208 LSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVN 267
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
+TQAVIFCNTRRKVD LTE + QF VS +HGDM Q RD IM+EFRSGSSR+LITTD+
Sbjct: 268 VTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDI 327
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLPSNRENYIH GVAINFVT++D R L+++ESYY
Sbjct: 328 LARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYY 387
Query: 270 STHIEEMPMNIADLI 226
+T IEEMP +IADLI
Sbjct: 388 TTQIEEMPESIADLI 402
>sp|P10081|IF4A_YEAST Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) (Stimulator factor
I 37 kDa component) (p37)
Length = 395
Score = 264 bits (674), Expect = 2e-70
Identities = 132/195 (67%), Positives = 162/195 (83%)
Frame = -1
Query: 810 LSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETLTDLYETLT 631
LSATMP DVLEVT KFMR+PV+ILVKK+ELTLEGI+QFYVNV EE+YK+E LTDLY++++
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 630 ITQAVIFCNTRRKVDYLTESLKAKQFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDL 451
+TQAVIFCNTRRKV+ LT L+ +F VS+++ D+ Q RD IMKEFRSGSSRILI+TDL
Sbjct: 260 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 319
Query: 450 LARGIDVQQVSLVINYDLPSNRENYIHXXXXXXXXXXXGVAINFVTQDDIRTLQDLESYY 271
LARGIDVQQVSLVINYDLP+N+ENYIH GVAINFVT +D+ +++LE +Y
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 270 STHIEEMPMNIADLI 226
ST IEE+P +IA L+
Sbjct: 380 STQIEELPSDIATLL 394
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,034,155
Number of Sequences: 369166
Number of extensions: 1441304
Number of successful extensions: 3461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3368
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)