Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_K18
(380 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa ... 43 3e-04
sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa ... 42 6e-04
sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa ... 36 0.024
sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Tra... 30 2.2
sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b 30 2.2
sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Tra... 29 2.9
sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adeno... 29 2.9
sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1) 29 3.8
sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1) 29 3.8
sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 (Tr... 28 5.0
>sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
(CI-15 kDa)
Length = 106
Score = 42.7 bits (99), Expect = 3e-04
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 8 VQGHFAMNLRSTGASYHTMQSSRWPI----HCQIMERDYYRCLARVGFQNEQKYCRIYRE 175
+Q F +N+ + T+QS P C E+++ C +G+ +K C+I +
Sbjct: 6 IQKRFGLNIDR----WLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYD 61
Query: 176 DVYECSFQEKAKRRRMYMTRMAMEKKAKGIEEPPKH 283
D EC ++K RR + + + +G PP H
Sbjct: 62 DFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPH 97
>sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
(CI-15 kDa)
Length = 106
Score = 41.6 bits (96), Expect = 6e-04
Identities = 24/94 (25%), Positives = 39/94 (41%)
Frame = +2
Query: 2 FVVQGHFAMNLRSTGASYHTMQSSRWPIHCQIMERDYYRCLARVGFQNEQKYCRIYREDV 181
F VQ ++L Q + P C E+++ C +G +K C+I ED
Sbjct: 4 FDVQKRLGVDLDRWMTIQSAEQPHKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEFEDF 63
Query: 182 YECSFQEKAKRRRMYMTRMAMEKKAKGIEEPPKH 283
EC ++K +R + R + +G PP H
Sbjct: 64 RECLLRQKTMKRLHAIRRQREKLIKEGKYTPPPH 97
>sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
(CI-15 kDa)
Length = 106
Score = 36.2 bits (82), Expect = 0.024
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 89 CQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKGIE 268
C E+++ C +G +K C+I +D EC + K RR + + + +G
Sbjct: 33 CHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKTMRRMHDIKKQREKLMKEGKY 92
Query: 269 EPPKH 283
PP H
Sbjct: 93 TPPPH 97
>sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Trace amine receptor 10)
(TaR-10)
Length = 344
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 4 CCSRSFCYESSEYGCIVSYDAKFPMADSL 90
CC +FCY S+ + C +S D + D L
Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b
Length = 344
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 4 CCSRSFCYESSEYGCIVSYDAKFPMADSL 90
CC +FCY S+ + C +S D + D L
Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Trace amine receptor 11)
(TaR-11)
Length = 344
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 4 CCSRSFCYESSEYGCIVSYDAKFPMADSL 90
CC +FCY S + C +S D + D L
Sbjct: 109 CCDAAFCYSSLFHLCFISVDRYIAVTDPL 137
>sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 284
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 86 HCQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKGI 265
H +E+D+ FQ K I+ ED+ S +E+ + +R+ ++KAK I
Sbjct: 70 HVVAVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQ------SRLRDDQKAKVI 123
Query: 266 EEPPKHL 286
P HL
Sbjct: 124 ANLPYHL 130
>sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1)
Length = 359
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 251 FSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNTFVHFEILLSLNTCNNPF 102
FS +P + TF DVL+ L T + D D + N C NPF
Sbjct: 251 FSWIPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICIAYFNNCLNPF 300
>sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1)
Length = 359
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 251 FSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNTFVHFEILLSLNTCNNPF 102
FS +P + TF DVL+ L T + D D + N C NPF
Sbjct: 251 FSWIPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICIAYFNNCLNPF 300
>sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 (Trace amine receptor 4) (TaR-4)
Length = 345
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 4 CCSRSFCYESSEYGCIVSYDAKFPMADSL 90
CC +FCY S + C +S D + D L
Sbjct: 110 CCDVAFCYSSLFHLCFISIDRYIAVTDPL 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,595,478
Number of Sequences: 369166
Number of extensions: 888384
Number of successful extensions: 2485
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2485
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)