Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_K16
(269 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55884|IF39_HUMAN Eukaryotic translation initiation fact... 28 5.1
sp|Q82GV2|FBIC_STRAW FO synthase (7,8-didemethyl-8-hydroxy-... 28 6.6
sp|Q5UZE6|SYA_HALMA Alanyl-tRNA synthetase (Alanine--tRNA l... 28 6.6
sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-as... 28 8.7
sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-as... 28 8.7
>sp|P55884|IF39_HUMAN Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p116) (eIF3 p110) (eIF3b)
Length = 814
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 10 EMEWPPQNRYMCTS-TWTI*TGYKIPNVGWTW 102
++EW P RY+ TS +W +K+ N W W
Sbjct: 656 DVEWDPTGRYVVTSVSW---WSHKVDNAYWLW 684
>sp|Q82GV2|FBIC_STRAW FO synthase (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
Length = 861
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 8 VKWNGHRRIDTCAPPHGQFKPGTKFPMWDGPGYYGYYHEALDRHSAGEFRTL 163
+ W +R+ AP G T +W PG G +H + D+ A R L
Sbjct: 181 MSWTDFQRLKPVAPSMGMMLETTATRLWSEPG--GPHHGSPDKEPAVRLRVL 230
>sp|Q5UZE6|SYA_HALMA Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 927
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 7 GEMEWPPQNRYMCTSTWTI*TGYKIPNVGWTWL 105
GE E NRY T+ + TGY + WTW+
Sbjct: 235 GEYEMKDGNRYSPMDTYIVDTGYGLER--WTWM 265
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A
(VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa
Vamp-associated protein) (VAP-33)
Length = 242
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 152 TRLRCVYPMPRDNNHNNQVHPTLGI 78
++LRCV+ MP +N+ N + P+ +
Sbjct: 117 SKLRCVFEMPNENDKLNDMEPSKAV 141
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A
(VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa
Vamp-associated protein) (VAP-33)
Length = 242
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 152 TRLRCVYPMPRDNNHNNQVHPTLGI 78
++LRCV+ MP +N+ N + P+ +
Sbjct: 117 SKLRCVFEMPNENDKLNDMEPSKAV 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,785,106
Number of Sequences: 369166
Number of extensions: 794611
Number of successful extensions: 1901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)