Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J23
(504 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 198 5e-51
sp|P13471|RS14_RAT 40S ribosomal protein S14 198 7e-51
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 194 1e-49
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 194 1e-49
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 192 4e-49
sp|Q08699|RS14_PODCA 40S ribosomal protein S14 190 2e-48
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 189 2e-48
sp|P14130|RS14_DROME 40S ribosomal protein S14 189 3e-48
sp|P48855|RS14_PROCL 40S ribosomal protein S14 189 3e-48
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 189 4e-48
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 198 bits (504), Expect = 5e-51
Identities = 96/140 (68%), Positives = 114/140 (81%)
Frame = +3
Query: 24 MASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGM 203
MA ++ KK E+ +SLGP+V EGE VFG+CHIFASFNDTFVHVTD++G ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 204 KVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXX 383
KVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 384 XSGMKIGRIEDVTPIPHDTT 443
SGMKIGRIEDVTPIP D+T
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 198 bits (503), Expect = 7e-51
Identities = 96/140 (68%), Positives = 114/140 (81%)
Frame = +3
Query: 24 MASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGM 203
MA ++ KK E+ +SLGP+V EGE VFG+CHIFASFNDTFVHVTD++G ETI RVTGGM
Sbjct: 1 MAPRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 204 KVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXX 383
KVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 384 XSGMKIGRIEDVTPIPHDTT 443
SGMKIGRIEDVTPIP D+T
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 194 bits (493), Expect = 1e-49
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = +3
Query: 30 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 209
SKRK + E V+LGP V EGE+VFG+ H+FASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 210 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 389
KADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 390 GMKIGRIEDVTPIPHDTT 443
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 194 bits (492), Expect = 1e-49
Identities = 95/138 (68%), Positives = 112/138 (81%)
Frame = +3
Query: 30 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 209
SKRK + E V+LGP V EGE+VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 210 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 389
KADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 390 GMKIGRIEDVTPIPHDTT 443
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 192 bits (488), Expect = 4e-49
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = +3
Query: 30 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 209
SKRK + + V+LGP V EGE+VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 210 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 389
KADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 390 GMKIGRIEDVTPIPHDTT 443
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPTDST 139
>sp|Q08699|RS14_PODCA 40S ribosomal protein S14
Length = 151
Score = 190 bits (482), Expect = 2e-48
Identities = 93/140 (66%), Positives = 110/140 (78%)
Frame = +3
Query: 24 MASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGM 203
MA ++ K E+ +SLGP+V +GE VFG+ HIFASFNDTFVHVTD++G ETI RVTGGM
Sbjct: 1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGM 60
Query: 204 KVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXX 383
KVKADRDESSPYAAMLAAQDVA RCK++GITA+HV++RATGG +++T
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALA 120
Query: 384 XSGMKIGRIEDVTPIPHDTT 443
SGMKIGRIEDVTPIP D T
Sbjct: 121 RSGMKIGRIEDVTPIPSDCT 140
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 189 bits (481), Expect = 2e-48
Identities = 95/141 (67%), Positives = 111/141 (78%), Gaps = 1/141 (0%)
Frame = +3
Query: 24 MASKRKNVKKVEEQV-SLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGG 200
MA RK K E+ V SLGP+ EGE +FG+ HIFASFNDTFVH+TD++G ETIVRVTGG
Sbjct: 1 MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60
Query: 201 MKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXX 380
MKVKADRDESSPYAAMLAAQDVA+RCKQLGI A+H+++RATGGT+++T
Sbjct: 61 MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120
Query: 381 XXSGMKIGRIEDVTPIPHDTT 443
+GMKIGRIEDVTPIP D T
Sbjct: 121 ARAGMKIGRIEDVTPIPSDCT 141
>sp|P14130|RS14_DROME 40S ribosomal protein S14
Length = 151
Score = 189 bits (480), Expect = 3e-48
Identities = 93/140 (66%), Positives = 111/140 (79%)
Frame = +3
Query: 24 MASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGM 203
MA ++ V+K E QV LGP+V +GE VFG+ HI+ASFNDTFVHVTD++G ETI RVTGGM
Sbjct: 1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60
Query: 204 KVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXX 383
KVKADRDE+SPYAAMLAAQDVAE+CK LGITA+H+++RATGG K++T
Sbjct: 61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 384 XSGMKIGRIEDVTPIPHDTT 443
S MKIGRIEDVTPIP D+T
Sbjct: 121 RSSMKIGRIEDVTPIPSDST 140
>sp|P48855|RS14_PROCL 40S ribosomal protein S14
Length = 151
Score = 189 bits (480), Expect = 3e-48
Identities = 89/140 (63%), Positives = 111/140 (79%)
Frame = +3
Query: 24 MASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGM 203
MA ++ V+K E QV LGP+V +GE+VF +CHI+AS+NDTFVHVTD++G ETIVR+TGG
Sbjct: 1 MAPRKGKVQKEEVQVQLGPQVLDGEKVFAVCHIYASYNDTFVHVTDLSGRETIVRITGGQ 60
Query: 204 KVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXX 383
KVKADRDESSPYAAMLAAQDVAE+CK LGI +H+++RATGG K++T
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAEKCKSLGINCLHIKIRATGGNKTKTPGPGGQSALRALA 120
Query: 384 XSGMKIGRIEDVTPIPHDTT 443
+GMKIGRIEDVTP+P D+T
Sbjct: 121 RAGMKIGRIEDVTPVPSDST 140
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 189 bits (479), Expect = 4e-48
Identities = 90/138 (65%), Positives = 111/138 (80%)
Frame = +3
Query: 30 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 209
S RK ++ +E+ LGP V EGE VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SGRKKTREPKEENVLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 210 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 389
KADRDESSPYAAMLA+QDVA+RCK+LGITA+H+++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 390 GMKIGRIEDVTPIPHDTT 443
GMKIGRIEDVTP+P D+T
Sbjct: 122 GMKIGRIEDVTPVPTDST 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,590,631
Number of Sequences: 369166
Number of extensions: 648397
Number of successful extensions: 2242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2023
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)