Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J16
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53458|ACT5_DIPDE Actin-5 275 7e-74
sp|P53457|ACT3_DIPDE Actin-3 273 2e-73
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 273 3e-73
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 272 4e-73
sp|O16808|ACT_MAYDE Actin 272 4e-73
sp|P10984|ACT2_CAEEL Actin-2 271 8e-73
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 271 8e-73
sp|Q26065|ACT_PLAMG Actin, adductor muscle 271 8e-73
sp|P53463|ACTM_HELER Actin, cytoskeletal (M) 271 8e-73
sp|P53506|ACT8_XENLA Actin, cytoplasmic type 8 271 8e-73
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 275 bits (702), Expect = 7e-74
Identities = 143/183 (78%), Positives = 151/183 (82%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGR
Sbjct: 84 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR 143
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 144 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 203
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + N K L DG TIGNERF+CPEALFQP FL
Sbjct: 204 IVRDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFL 263
Query: 538 GLE 546
G+E
Sbjct: 264 GME 266
>sp|P53457|ACT3_DIPDE Actin-3
Length = 377
Score = 273 bits (699), Expect = 2e-73
Identities = 142/183 (77%), Positives = 151/183 (82%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI+FETFN+PAMYVAIQAVLSLYASGR
Sbjct: 90 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIVFETFNSPAMYVAIQAVLSLYASGR 149
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLD+AGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 150 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDMAGRDLTDYLMKILTERGYSFTTTAERE 209
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + N K L DG TIGNERF+CPEALFQP FL
Sbjct: 210 IVRDIKEKLCYVALDFEQEMSNAASSSALEKTYELPDGQVITIGNERFRCPEALFQPNFL 269
Query: 538 GLE 546
GLE
Sbjct: 270 GLE 272
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 273 bits (697), Expect = 3e-73
Identities = 142/183 (77%), Positives = 150/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ T+L + K L DG TIGNERF+CPE LFQP F+
Sbjct: 209 IVRDIKEKLCYTALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPETLFQPAFI 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 272 bits (695), Expect = 4e-73
Identities = 141/183 (77%), Positives = 150/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + + K L DG TIGNERF+CPEALFQP FL
Sbjct: 209 IVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|O16808|ACT_MAYDE Actin
Length = 376
Score = 272 bits (695), Expect = 4e-73
Identities = 142/183 (77%), Positives = 150/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + K L DG TIGNERF+CPE+LFQP FL
Sbjct: 209 IVRDIKEKLSYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPESLFQPSFL 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 271 bits (693), Expect = 8e-73
Identities = 141/183 (77%), Positives = 149/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + K L DG T+GNERF+CPEALFQP FL
Sbjct: 209 IVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFL 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 271 bits (693), Expect = 8e-73
Identities = 140/183 (76%), Positives = 150/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + + K L DG TIGNERF+CPEA+FQP FL
Sbjct: 209 IVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFL 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 271 bits (693), Expect = 8e-73
Identities = 142/183 (77%), Positives = 150/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + K L DG TIGNERF+CPE+LFQP FL
Sbjct: 209 IVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFL 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
Length = 376
Score = 271 bits (693), Expect = 8e-73
Identities = 141/183 (77%), Positives = 150/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ ++L + K L DG TIGNERF+CPE LFQP F+
Sbjct: 209 IVRDIKEKLCYSALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPETLFQPAFI 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
>sp|P53506|ACT8_XENLA Actin, cytoplasmic type 8
Length = 376
Score = 271 bits (693), Expect = 8e-73
Identities = 141/183 (77%), Positives = 149/183 (81%), Gaps = 1/183 (0%)
Frame = +1
Query: 1 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR 180
HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGR
Sbjct: 89 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 148
Query: 181 TTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA-GE 357
TTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA E
Sbjct: 149 TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 208
Query: 358 KS*EISQRNFVTSLLILMQNENXXXXXXXRKIMNLHDGSSNTIGNERFKCPEALFQPGFL 537
+I ++ +L + K L DG TIGNERF+CPEALFQP FL
Sbjct: 209 IVRDIKEKPCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 268
Query: 538 GLE 546
G+E
Sbjct: 269 GME 271
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,005,483
Number of Sequences: 369166
Number of extensions: 1092558
Number of successful extensions: 4010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3323
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)