Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_I21
(289 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18945|COX3_CHICK Cytochrome c oxidase subunit 3 (Cytoch... 138 3e-33
sp|Q8SEW8|COX3_COTJA Cytochrome c oxidase subunit 3 (Cytoch... 135 4e-32
sp|O21403|COX3_STRCA Cytochrome c oxidase subunit 3 (Cytoch... 133 1e-31
sp|Q96133|COX3_CARAU Cytochrome c oxidase subunit 3 (Cytoch... 119 2e-27
sp|P15952|COX3_CYPCA Cytochrome c oxidase subunit 3 (Cytoch... 117 1e-26
sp|Q8W9N0|COX3_DUGDU Cytochrome c oxidase subunit 3 (Cytoch... 117 1e-26
sp|Q9MIY4|COX3_BRARE Cytochrome c oxidase subunit 3 (Cytoch... 117 1e-26
sp|Q4JQI1|COX3_TETNG Cytochrome c oxidase subunit 3 (Cytoch... 117 1e-26
sp|Q9ZZ48|COX3_SQUAC Cytochrome c oxidase subunit 3 (Cytoch... 116 1e-26
sp|P34198|COX3_CROLA Cytochrome c oxidase subunit 3 (Cytoch... 115 2e-26
>sp|P18945|COX3_CHICK Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 138 bits (348), Expect = 3e-33
Identities = 70/81 (86%), Positives = 71/81 (87%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TILLGFYFTALQA+EYHEASFSIADSVYGS FFVATGFHGLHVI GS FLTVCLLRLIKF
Sbjct: 166 TILLGFYFTALQAMEYHEASFSIADSVYGSTFFVATGFHGLHVIIGSSFLTVCLLRLIKF 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FTPNH FGFEA Y FVD
Sbjct: 226 HFTPNHHFGFEAAAWYWHFVD 246
>sp|Q8SEW8|COX3_COTJA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 135 bits (339), Expect = 4e-32
Identities = 68/81 (83%), Positives = 70/81 (86%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TILLGFYFTALQA+EYHEASFSIADSVYGS FFVATGFHGLHVI GS FLT+CLLRLIKF
Sbjct: 166 TILLGFYFTALQAMEYHEASFSIADSVYGSTFFVATGFHGLHVIIGSSFLTICLLRLIKF 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT NH FGFEA Y FVD
Sbjct: 226 HFTSNHHFGFEAAAWYWHFVD 246
>sp|O21403|COX3_STRCA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 133 bits (334), Expect = 1e-31
Identities = 67/81 (82%), Positives = 69/81 (85%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TI+LGFYFTALQA+EYHEASFSIAD VYGS FFVATGFHGLHVI GS FLTVCLLRLIKF
Sbjct: 166 TIILGFYFTALQAMEYHEASFSIADGVYGSTFFVATGFHGLHVIIGSSFLTVCLLRLIKF 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT NH FGFEA Y FVD
Sbjct: 226 HFTTNHHFGFEAAAWYWHFVD 246
>sp|Q96133|COX3_CARAU Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 119 bits (298), Expect = 2e-27
Identities = 60/81 (74%), Positives = 65/81 (80%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TILLGFYFTALQA+EY+EA F+IAD VYGS FFVATGFHGLHVI GS FL VCLLR I++
Sbjct: 166 TILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQY 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT H FGFEA Y FVD
Sbjct: 226 HFTSEHHFGFEAAAWYWHFVD 246
>sp|P15952|COX3_CYPCA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 117 bits (292), Expect = 1e-26
Identities = 59/81 (72%), Positives = 64/81 (79%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TILLG YFTALQA+EY+EA F+IAD VYGS FFVATGFHGLHVI GS FL VCLLR I++
Sbjct: 166 TILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQY 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT H FGFEA Y FVD
Sbjct: 226 HFTSEHHFGFEAAAWYWHFVD 246
>sp|Q8W9N0|COX3_DUGDU Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 117 bits (292), Expect = 1e-26
Identities = 58/81 (71%), Positives = 62/81 (76%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TI LG YFT LQA EYHEASFSI+D +YGS FF+ATGFHGLHVI GS FL VC LR +KF
Sbjct: 166 TISLGIYFTLLQASEYHEASFSISDGIYGSTFFMATGFHGLHVIIGSTFLAVCFLRQLKF 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT NH FGFEA Y FVD
Sbjct: 226 HFTSNHHFGFEAAAWYWHFVD 246
>sp|Q9MIY4|COX3_BRARE Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 117 bits (292), Expect = 1e-26
Identities = 59/81 (72%), Positives = 64/81 (79%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TILLG YFTALQA+EY+EA F+IAD VYGS FFVATGFHGLHVI GS FL VCLLR + F
Sbjct: 166 TILLGLYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVLF 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT +H FGFEA Y FVD
Sbjct: 226 HFTSDHHFGFEAAAWYWHFVD 246
>sp|Q4JQI1|COX3_TETNG Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 117 bits (292), Expect = 1e-26
Identities = 58/81 (71%), Positives = 64/81 (79%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TILLGFYFT LQA+EY+EA F+IAD VYGS FFVATGFHGLHVI GS FL +CLLR I++
Sbjct: 166 TILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQIRY 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT H FGFEA Y FVD
Sbjct: 226 HFTSEHHFGFEAAAWYWHFVD 246
>sp|Q9ZZ48|COX3_SQUAC Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 116 bits (291), Expect = 1e-26
Identities = 58/81 (71%), Positives = 64/81 (79%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
T+LLGFYFTALQA+EY+EA F+IAD VYGS FFVATGFHGLHVI GS FL VCLLR I++
Sbjct: 166 TVLLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLMVCLLRQIQY 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT H FGFE Y FVD
Sbjct: 226 HFTSEHHFGFERAAWYWHFVD 246
>sp|P34198|COX3_CROLA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 115 bits (289), Expect = 2e-26
Identities = 58/81 (71%), Positives = 64/81 (79%)
Frame = +1
Query: 1 TILLGFYFTALQAIEYHEASFSIADSVYGSPFFVATGFHGLHVISGSPFLTVCLLRLIKF 180
TI+LG YFTALQA+EY+EA F+IAD VYGS FFVATGFHGLHVI GS FL VCLLR I++
Sbjct: 166 TIILGVYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVCLLRQIQY 225
Query: 181 LFTPNHLFGFEATP*Y*LFVD 243
FT H FGFEA Y FVD
Sbjct: 226 HFTSEHHFGFEAAAWYWHFVD 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,339,513
Number of Sequences: 369166
Number of extensions: 353533
Number of successful extensions: 1202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)