Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_I18
(299 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZDK3|SYE1_RICPR Glutamyl-tRNA synthetase 1 (Glutamate-... 29 2.9
sp|P60290|RPOC2_PHYPA DNA-directed RNA polymerase beta'' ch... 29 3.8
sp|Q15172|2A5A_HUMAN Serine/threonine protein phosphatase 2... 28 6.4
sp|Q21534|YVL7_CAEEL Hypothetical UPF0028 protein M110.7 in... 28 8.4
sp|Q9UR39|HST4_SCHPO NAD-dependent deacetylase hst4 (Homolo... 28 8.4
sp|P11954|THD2_SALTY Threonine dehydratase catabolic (Threo... 28 8.4
>sp|Q9ZDK3|SYE1_RICPR Glutamyl-tRNA synthetase 1 (Glutamate--tRNA ligase 1) (GluRS 1)
Length = 447
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/42 (30%), Positives = 28/42 (66%), Gaps = 8/42 (19%)
Frame = +2
Query: 53 IRNYIEK----NFQFYMNY----YSETCKAQMKYDGQLMNDP 154
I+ YIE+ +++F+++Y + + K ++KYDG+ ++DP
Sbjct: 133 IQKYIEQGRKPHYRFFLSYEPISWFDMIKGEIKYDGKTLSDP 174
>sp|P60290|RPOC2_PHYPA DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1330
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 17 DVLEEKVQLPTVIRNYIEKNFQFYMNYYSETCKAQMKYDGQLM---NDPFGEKRGTFQFN 187
D L+ K+ + NY + F N+++ + + Y+ + + N+ + EK+ FQF
Sbjct: 485 DKLDNKLPIAKQTLNYFQLKEHFLNNFWNSIYSSIILYNYRFLEKKNNKY-EKKLLFQFM 543
Query: 188 ELLNRLESIKIKKLLEIENDVQYAIPES 271
L + +K + I ND +Y I S
Sbjct: 544 LKLPKNGILKQNDIFAIFNDPKYRIKNS 571
>sp|Q15172|2A5A_HUMAN Serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit,
alpha isoform (PP2A, B subunit, B' alpha isoform) (PP2A,
B subunit, B56 alpha isoform) (PP2A, B subunit, PR61
alpha isoform) (PP2A, B subunit, R5 alpha isoform)
Length = 486
Score = 28.1 bits (61), Expect = 6.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +2
Query: 113 KAQMKYDGQLMNDPFG--------EKRGTFQFNELLNRLESIKIKKLLEIEN 244
K M+ +G+L +D EK+ + EL +LE +K+KK LE +N
Sbjct: 420 KTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELKLKKALEKQN 471
>sp|Q21534|YVL7_CAEEL Hypothetical UPF0028 protein M110.7 in chromosome II
Length = 880
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 152 PFGEKRGTFQFNELLNRLESIKIKKLLEIENDVQY 256
PFGE+ NE+ NRL + +EI + QY
Sbjct: 760 PFGEELRVLNMNEVQNRLAYVCCVNQMEIVKNAQY 794
>sp|Q9UR39|HST4_SCHPO NAD-dependent deacetylase hst4 (Homologous to SIR2 protein 4)
Length = 415
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 146 NDPFGEKRGTFQFNELLNRLESIKIKKLLEIENDVQYAIP 265
ND + +FQ +++LN +E K+ EI+ +V+YA P
Sbjct: 377 NDSSKKDNTSFQLHQVLNSIEIPKV----EIKQEVEYATP 412
>sp|P11954|THD2_SALTY Threonine dehydratase catabolic (Threonine deaminase)
Length = 329
Score = 27.7 bits (60), Expect = 8.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 8 AVCDVLEEKVQLPTVIRNYIEKNFQFYMNYYSETCKAQ--MKYDGQLMNDPFGEKRGTFQ 181
A+ D+LE K +L I K NY+SE CK + +K++ ++ G+F+
Sbjct: 10 AIEDILEAKKRLA----GKIYKTGMPRSNYFSERCKGEIFLKFENM-------QRTGSFK 58
Query: 182 FNELLNRLESI 214
N+L S+
Sbjct: 59 IRGAFNKLSSL 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,018,029
Number of Sequences: 369166
Number of extensions: 474673
Number of successful extensions: 1315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)