Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_I08
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] bet... 200 3e-51
sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-... 199 6e-51
sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] bet... 196 4e-50
sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta... 186 5e-47
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 185 8e-47
sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-for... 184 2e-46
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 182 4e-46
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 182 7e-46
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 177 2e-44
sp|Q87A98|SUCC_XYLFT Succinyl-CoA synthetase beta chain (SC... 176 3e-44
>sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 432
Score = 200 bits (508), Expect = 3e-51
Identities = 99/148 (66%), Positives = 120/148 (81%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
+P E EAA+ L YIGL GNI C VNGAGLAMAT DI+ LNGG PANFLDLGGGV +QV
Sbjct: 283 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQV 342
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
QAF +LT DP+V++I +NIFGGIVNC IA G+T ACR++ELKVPL+VRLEGTNV A+
Sbjct: 343 YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVQEAQ 402
Query: 361 RILSNSGIPMKMSTDLDEAAKMAVHSVA 444
+IL+NSG+P+ + DL++AAK AV SVA
Sbjct: 403 KILNNSGLPITSAIDLEDAAKKAVASVA 430
>sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 433
Score = 199 bits (505), Expect = 6e-51
Identities = 99/147 (67%), Positives = 118/147 (80%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
+P E EAA+ L YIGL GNI C VNGAGLAMAT DI+ LNGG PANFLDLGGGV SQV
Sbjct: 284 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 343
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
QAF +LT DP+V++I +NIFGGIVNC IA G+T ACR++ELKVPL+VRLEGTNV A+
Sbjct: 344 YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQ 403
Query: 361 RILSNSGIPMKMSTDLDEAAKMAVHSV 441
IL+NSG+P+ + DL++AAK AV SV
Sbjct: 404 NILTNSGLPITSAVDLEDAAKKAVASV 430
>sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 404
Score = 196 bits (498), Expect = 4e-50
Identities = 97/148 (65%), Positives = 118/148 (79%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
+P E EAA+ L YIGL GNI C VNGAGLAMAT DI+ LNGG PANFLDLGGGV +QV
Sbjct: 255 EPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQV 314
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
+AF +LT DP+V++I +NIFGGIVNC IA G+T ACR++ELKVPL+VRLEGTNV A+
Sbjct: 315 YEAFKLLTSDPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVQEAQ 374
Query: 361 RILSNSGIPMKMSTDLDEAAKMAVHSVA 444
IL +SG+P+ + DL++AAK AV SVA
Sbjct: 375 NILKSSGLPITSAVDLEDAAKKAVASVA 402
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 421
Score = 186 bits (471), Expect = 5e-47
Identities = 90/148 (60%), Positives = 116/148 (78%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
Dpre+ AA+ LNYIGL G IGC+VNGAGLAMATMDI+KL+GGTPANFLD+GG + QV
Sbjct: 273 DpreVAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQV 332
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
+AF ILT D +VK+I +NIFGGI+ C IA G+ A ++V LKVP++VRLEGTNV+ +
Sbjct: 333 VEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGK 392
Query: 361 RILSNSGIPMKMSTDLDEAAKMAVHSVA 444
RIL SG+ + + DLD+AA+ AV ++A
Sbjct: 393 RILKESGMKLITADDLDDAAEKAVKALA 420
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 185 bits (469), Expect = 8e-47
Identities = 86/144 (59%), Positives = 115/144 (79%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
D R+ +AA+ LNYIGL GNIGC+VNGAGLAMATMDI+KL+GGTPANFLD+GGG T QV
Sbjct: 260 DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQV 319
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
+AF ++T D +V SI +NIFGGI+ C IA+G+ A +D+E+K+P++VRL+GT VD A+
Sbjct: 320 TEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAK 379
Query: 361 RILSNSGIPMKMSTDLDEAAKMAV 432
++++SG+ + DLDEAAKM V
Sbjct: 380 ALIADSGLKILACDDLDEAAKMVV 403
>sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 415
Score = 184 bits (466), Expect = 2e-46
Identities = 88/147 (59%), Positives = 113/147 (76%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
Dpre++A Q LNYIG+ GNI C+VNGAGLAMATMD++KL+GG PANFLD+GG VT V
Sbjct: 267 DpreVDAHQFNLNYIGMDGNIACLVNGAGLAMATMDLIKLHGGEPANFLDVGGAVTEDAV 326
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
A I+T DP+VK + INIFGGIVNC TIA G+ +A + L VP++VRLEGTNVD+A+
Sbjct: 327 FNAVRIITSDPRVKCVLINIFGGIVNCATIANGVVSAVNKIGLNVPMVVRLEGTNVDAAK 386
Query: 361 RILSNSGIPMKMSTDLDEAAKMAVHSV 441
+I+ SG+ + + +LDEAA AV S+
Sbjct: 387 QIMKKSGLKILTANNLDEAAAKAVSSL 413
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 182 bits (463), Expect = 4e-46
Identities = 84/144 (58%), Positives = 115/144 (79%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
D R+ +AA+ LNYIGL GNIGC+VNGAGLAMATMDI+KL+GGTPANFLD+GGG T QV
Sbjct: 298 DERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQV 357
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
+AF ++T D +V +I +NIFGGI+ C IA+G+ A +D+E+K+P++VRL+GT VD A+
Sbjct: 358 TEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAK 417
Query: 361 RILSNSGIPMKMSTDLDEAAKMAV 432
++++SG+ + DLDEAA+M V
Sbjct: 418 ALIADSGLKILACDDLDEAARMVV 441
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 182 bits (461), Expect = 7e-46
Identities = 83/144 (57%), Positives = 115/144 (79%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
D R+ EAA +NYIGL G+IGC+VNGAGLAMATMDI+KL+GGTPANFLD+GGG T QV
Sbjct: 298 DERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQV 357
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
+AF ++T D +V++I +NIFGGI+ C IA+G+ A +D+E+++P++VRL+GT VD A+
Sbjct: 358 TEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGTRVDDAK 417
Query: 361 RILSNSGIPMKMSTDLDEAAKMAV 432
++++SG+ + DLDEAAKM V
Sbjct: 418 ALIADSGLKILACDDLDEAAKMVV 441
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 177 bits (449), Expect = 2e-44
Identities = 81/144 (56%), Positives = 114/144 (79%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
DP E+ AAQ GLN+I L G+IGC+VNGAGLAMATMDI+KLNGG PANFLD+GGG T + +
Sbjct: 282 DPDEVRAAQAGLNFIKLDGDIGCLVNGAGLAMATMDIIKLNGGQPANFLDVGGGATPAAI 341
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
++AF ++T DP+V +IF+NIFGGIV C IA GL + ++LK+P+I RL+GTN+++AR
Sbjct: 342 REAFELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVKSLDLKIPIIARLQGTNMEAAR 401
Query: 361 RILSNSGIPMKMSTDLDEAAKMAV 432
+++++SG+ + DL AA+ +V
Sbjct: 402 QLINDSGMKIFSIDDLQSAAEKSV 425
>sp|Q87A98|SUCC_XYLFT Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 387
Score = 176 bits (447), Expect = 3e-44
Identities = 83/147 (56%), Positives = 115/147 (78%)
Frame = +1
Query: 1 DpreIEAAQNGLNYIGLHGNIGCVVNGAGLAMATMDIVKLNGGTPANFLDLGGGVTASQV 180
D E+ A++N LNY+ + GNIGC+VNGAGLAMATMD++KLNGG PANFLD+GGG T +V
Sbjct: 239 DETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGATKERV 298
Query: 181 KQAFHILTGDPQVKSIFINIFGGIVNCGTIAEGLTAACRDVELKVPLIVRLEGTNVDSAR 360
AF ++ +VK+IF+NIFGGIV C IAEG+ AA ++V +KVP+IVRLEGTNVD+ +
Sbjct: 299 TTAFKLILSSNKVKAIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVIVRLEGTNVDAGK 358
Query: 361 RILSNSGIPMKMSTDLDEAAKMAVHSV 441
++L+ SG+ + + D+++ AK AV +V
Sbjct: 359 QLLATSGLAIIPADDINDGAKKAVAAV 385
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,665,897
Number of Sequences: 369166
Number of extensions: 1735312
Number of successful extensions: 5589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)