Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H24
(417 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40305|INI7_HUMAN Interferon-alpha-induced 11.5 kDa prot... 46 3e-05
sp|Q9H2X8|FM14A_HUMAN Protein FAM14A precursor (ISG12(b) pr... 43 2e-04
sp|Q96BM0|FM14B_HUMAN Protein FAM14B (ISG12(c) protein) 42 7e-04
sp|P09912|INI2_HUMAN Interferon-induced protein 6-16 precur... 41 0.001
sp|Q28808|INI2_PANTR Interferon-induced protein 6-16 precur... 41 0.001
sp|P27650|HUPE_RHILV Protein hupE precursor 32 0.52
sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromo... 30 2.0
sp|P0ABL1|NRFB_ECOLI Cytochrome c-type protein nrfB precurs... 29 4.4
sp|Q01941|DPOG_PICPA DNA polymerase gamma (Mitochondrial DN... 28 5.8
sp|Q9YUS2|DPOL_TUHV2 DNA polymerase 28 5.8
>sp|P40305|INI7_HUMAN Interferon-alpha-induced 11.5 kDa protein (p27) (ISG12(a) protein)
Length = 122
Score = 45.8 bits (107), Expect = 3e-05
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 92 GVAGFAIGACILPALGFGLAGITAGSIAAKM-------QGPAVTAGSIFAILQSLGAT 244
GV A +L A+GF AGI + SIAAKM G V +GS+ A LQSLGAT
Sbjct: 40 GVVAMAAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGAT 97
>sp|Q9H2X8|FM14A_HUMAN Protein FAM14A precursor (ISG12(b) protein) (TLH29 protein)
(pIFI27-like protein)
Length = 130
Score = 43.1 bits (100), Expect = 2e-04
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Frame = +2
Query: 83 ASMGVAG-FAIGAC--ILPALGFGLAGITAGSIAAKM-------QGPAVTAGSIFAILQS 232
A+ V G A+GA +L A+GF AGI A SIAAKM G V+AGS+ A LQS
Sbjct: 6 AAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQS 65
Query: 233 LGA 241
+GA
Sbjct: 66 VGA 68
>sp|Q96BM0|FM14B_HUMAN Protein FAM14B (ISG12(c) protein)
Length = 104
Score = 41.6 bits (96), Expect = 7e-04
Identities = 27/57 (47%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +2
Query: 92 GVAGFAIGACILPALGFGLAGITAGSIAAKM-------QGPAVTAGSIFAILQSLGA 241
GV L A+GF GI A SIAAKM G V AGS+ AILQS+GA
Sbjct: 20 GVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGA 76
>sp|P09912|INI2_HUMAN Interferon-induced protein 6-16 precursor (Ifi-6-16)
Length = 130
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 80 GASMGVAGFAIGACILPALGFGLAGITAGSIAAK-------MQGPAVTAGSIFAILQSLG 238
G + VAG LPALGF AGI A S+AA + G V AG + A LQSLG
Sbjct: 48 GGGLAVAG-------LPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLG 100
Query: 239 A 241
A
Sbjct: 101 A 101
>sp|Q28808|INI2_PANTR Interferon-induced protein 6-16 precursor (Ifi-6-16)
Length = 130
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 80 GASMGVAGFAIGACILPALGFGLAGITAGSIAAK-------MQGPAVTAGSIFAILQSLG 238
G + VAG LPALGF AGI A S+AA + G V AG + A LQSLG
Sbjct: 48 GGGLAVAG-------LPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLG 100
Query: 239 A 241
A
Sbjct: 101 A 101
>sp|P27650|HUPE_RHILV Protein hupE precursor
Length = 191
Score = 32.0 bits (71), Expect = 0.52
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 59 IKLRVICGASMGVAGFAIGACILPALGFGLAGI---TAGSIAAKMQGPAV 199
I+L + A+ VAGF IL LG GLA + AG + A++ G AV
Sbjct: 132 IELPTMSNATGYVAGFLAATVILHVLGIGLASLRFGKAGQVVARVAGGAV 181
>sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromosome III
Length = 243
Score = 30.0 bits (66), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 80 GASMGVAGFAIGACILPALGFGLAGITAGSIAAKMQGPA 196
G S G G A+G ILP +G + G+ AA + G A
Sbjct: 160 GWSGGAIGSAVGTLILPGIGTAVGSFLGGASAALVAGKA 198
>sp|P0ABL1|NRFB_ECOLI Cytochrome c-type protein nrfB precursor
sp|P0ABL2|NRFB_ECOL6 Cytochrome c-type protein nrfB precursor
Length = 188
Score = 28.9 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 345 SPGYSVLHSHQPNFTAKEAKRARAADPNNKLP 250
+P + L H+P+ K A +PNNKLP
Sbjct: 44 NPDAACLDCHKPDTEGMHGKHASVINPNNKLP 75
>sp|Q01941|DPOG_PICPA DNA polymerase gamma (Mitochondrial DNA polymerase catalytic
subunit)
Length = 1012
Score = 28.5 bits (62), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 117 APIANPATPILAPQITLSFIKLELLTNGFL 28
A +A+P TP+L IT K L TN FL
Sbjct: 790 AEMAHPKTPVLGAGITAPLQKANLSTNNFL 819
>sp|Q9YUS2|DPOL_TUHV2 DNA polymerase
Length = 1171
Score = 28.5 bits (62), Expect = 5.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Frame = +2
Query: 2 EMFEKCETCKKPLVNNSNLIKLRVICGASMGVAGFAIG-------ACILPALGFGLAGIT 160
E +CE + L+ + + L+V C A G GF+ G A + +G + T
Sbjct: 777 EAMRECEDETRRLLLDKEQLALKVTCNAFYGFTGFSQGMLPCLPVAASITTIGRDMLSRT 836
Query: 161 AGSIAAKMQGPAVTA 205
+ I A PA A
Sbjct: 837 SAYIEAHFAEPAFLA 851
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,739,287
Number of Sequences: 369166
Number of extensions: 568312
Number of successful extensions: 2122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2116
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)