Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H22-1
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59797|SELV_HUMAN Selenoprotein V 41 7e-04
sp|Q9VMV6|SELT_DROME SelT-like protein precursor 34 0.090
sp|P62341|SELT_HUMAN Selenoprotein T precursor 33 0.20
sp|P62342|SELT_MOUSE Selenoprotein T precursor 33 0.20
sp|P63303|SEPW1_MACMU Selenoprotein W >gi|54039597|sp|P6330... 31 0.76
sp|Q95KL4|SEPW1_PIG Selenoprotein W 30 2.2
sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member... 29 2.9
sp|Q895P5|ENGC_CLOTE Probable GTPase engC 29 2.9
sp|O75346|ZN253_HUMAN Zinc finger protein 253 (Bone marrow ... 29 3.8
sp|P63301|SEPW1_RAT Selenoprotein W >gi|54039596|sp|P63300|... 29 3.8
>sp|P59797|SELV_HUMAN Selenoprotein V
Length = 346
Score = 41.2 bits (95), Expect = 7e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = -3
Query: 339 MHVEYCGS*GYNNTYNTLKQDIQRAINNVHFTFEIGRK----GSFEVMINGILIFSKLEL 172
+ V YCG Y+ Y LK+ +++ N H FE R G FEV +NG L+ SK
Sbjct: 265 IRVTYCGLCSYSLRYILLKKSLEQQFPN-HLLFEEDRAAQATGEFEVFVNGRLVHSKKRG 323
Query: 171 GGFPKNEQVIEVIKSV 124
GF NE ++ I SV
Sbjct: 324 DGF-VNESRLQKIVSV 338
>sp|Q9VMV6|SELT_DROME SelT-like protein precursor
Length = 198
Score = 34.3 bits (77), Expect = 0.090
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -3
Query: 225 GSFEVMINGILIFSKLELGGFPKNEQVIEVIKS-VQSGEKPYKLTQFV 85
G+FE+ +N + ++SKL+ G FP E + ++I + +Q EK + FV
Sbjct: 150 GAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHLQFTEKVQENPDFV 197
>sp|P62341|SELT_HUMAN Selenoprotein T precursor
Length = 195
Score = 33.1 bits (74), Expect = 0.20
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = -3
Query: 225 GSFEVMINGILIFSKLELGGFPKNEQVIEVI 133
G+FE+ +N + ++SKLE G P +Q+++++
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|P62342|SELT_MOUSE Selenoprotein T precursor
Length = 195
Score = 33.1 bits (74), Expect = 0.20
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = -3
Query: 225 GSFEVMINGILIFSKLELGGFPKNEQVIEVI 133
G+FE+ +N + ++SKLE G P +Q+++++
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>sp|P63303|SEPW1_MACMU Selenoprotein W
sp|P63302|SEPW1_HUMAN Selenoprotein W
Length = 87
Score = 31.2 bits (69), Expect = 0.76
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 345 VGMHVEYCGS*GYNNTYNTLKQDIQRAINNVHFTFEIG---RKGSFEVMINGILIFSKLE 175
+ + V YCG+ GY + Y LK+ ++ G G FEVM+ G LI SK +
Sbjct: 3 LAVRVVYCGACGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
Query: 174 LGGFPKNE 151
G+ E
Sbjct: 63 GDGYVDTE 70
>sp|Q95KL4|SEPW1_PIG Selenoprotein W
Length = 87
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 345 VGMHVEYCGS*GYNNTYNTLKQDIQRAINNVHFTFEIGR---KGSFEVMINGILIFSKLE 175
V + V YCG+ GY + Y LK+ ++ G G FEV++ G L+ SK
Sbjct: 3 VAVRVVYCGACGYKSKYLQLKKKLEDEFPGRLDICGEGTPQVTGFFEVLVAGKLVHSKKG 62
Query: 174 LGGFPKNE 151
G+ E
Sbjct: 63 GDGYVDTE 70
>sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2 precursor
Length = 227
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 257 LLMARCISCLRVL*VLL*PHDPQYSTCIPTSMTSP 361
LL A C+ C V L DP CIP +TSP
Sbjct: 8 LLKALCLLCFNVCFTLASDPDPIQDFCIPKPVTSP 42
>sp|Q895P5|ENGC_CLOTE Probable GTPase engC
Length = 290
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = -3
Query: 207 INGILIFSKLELGGFPKNEQVIEVIKS 127
IN ++ F+K++L P+ E+V+++IKS
Sbjct: 104 INAVVAFNKVDLVENPEKEEVVDIIKS 130
>sp|O75346|ZN253_HUMAN Zinc finger protein 253 (Bone marrow zinc finger 1) (BMZF-1)
Length = 275
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = -3
Query: 345 VGMH-VEYCGS*GYNNTYNTLKQDIQRAINNVHFTFEIGRKGSFEVMINGILIFSKLELG 169
VG H V G G N T +++I + + +++ GI +F + G
Sbjct: 119 VGEHKVHKGGYNGLNQCLTTTQKEIFQCDKYGKVFHKFSNSNTYKTRHTGINLFKCIICG 178
Query: 168 GFPKNEQVIEVIKSVQSGEKPYK 100
K + K + +GEKPY+
Sbjct: 179 KAFKRSSTLTTHKKIHTGEKPYR 201
>sp|P63301|SEPW1_RAT Selenoprotein W
sp|P63300|SEPW1_MOUSE Selenoprotein W
Length = 88
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -3
Query: 345 VGMHVEYCGS*GYNNTYNTLKQDIQRAINNVHFTFEIGR---KGSFEVMINGILIFSKLE 175
+ + V YCG+ GY Y LK+ ++ G G FEV + G L+ SK
Sbjct: 3 LAVRVVYCGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKR 62
Query: 174 LGGFPKNE 151
G+ E
Sbjct: 63 GDGYVDTE 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,453,721
Number of Sequences: 369166
Number of extensions: 697410
Number of successful extensions: 1934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)