Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H19
(295 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 52 4e-07
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 39 0.004
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 37 0.018
sp|Q05546|TENR_RAT Tenascin-R precursor (TN-R) (Restrictin)... 35 0.053
sp|Q8BYI9|TENR_MOUSE Tenascin-R precursor (TN-R) (Restricti... 35 0.053
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 35 0.069
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 35 0.069
sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion)... 34 0.090
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 33 0.15
sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrach... 33 0.20
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 52.0 bits (123), Expect = 4e-07
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +2
Query: 50 ECTDSGDDCSSKTGEDCTLED----VYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMD 217
ECTD +DCS C++++ ++ CPK+C+ C C D+ C + RG C K D
Sbjct: 106 ECTDLANDCSYNQNR-CSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFD 164
Query: 218 -DRV---CRKTCGHC 250
D+V C K+C C
Sbjct: 165 HDKVQKSCAKSCNIC 179
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 38.9 bits (89), Expect = 0.004
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 23 LIVVAMCEDECTDSGDDCSSKTGEDCT---LEDVYTKCPKSCHFCGDCADSRPDCDV--- 184
L V + +C DS DC++ G T + + +C ++C+ C DC D +C
Sbjct: 13 LFVSSGVAQQCMDSASDCAANAGSCFTRPVSQVLQNRCQRTCNTC-DCRDEANNCAASIN 71
Query: 185 LKERGDCDKMDDRVCRKTCGHC 250
L + + + C+KTCG C
Sbjct: 72 LCQNPTFEPLVRDRCQKTCGLC 93
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 36.6 bits (83), Expect = 0.018
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 83 KTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 250
+TGEDC+ +CP CH G C R +C+ + DC +M C C G C
Sbjct: 429 RTGEDCS----QLRCPNDCHGRGRCVQGRCECEHGFQGYDCSEMS---CPHDCHQHGRC 480
Score = 34.3 bits (77), Expect = 0.090
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 89 GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 214
G DC+ +CP CH G C D R +CD E DC ++
Sbjct: 369 GADCSER----RCPSDCHNRGRCLDGRCECDDGFEGEDCGEL 406
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Frame = +2
Query: 41 CEDE---CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCD 208
C +E C D C GEDC C +CH G C ++ CD DC
Sbjct: 256 CSEEHGRCVDGRCVCQEGFAGEDCN----EPLCLHNCHGRGRCVENECVCDEGFTGEDCG 311
Query: 209 KMDDRVCRKTC---GHC 250
++ +C K C G C
Sbjct: 312 EL---ICPKDCFDRGRC 325
Score = 29.3 bits (64), Expect = 2.9
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 28/90 (31%)
Frame = +2
Query: 20 GLIVVAMCEDECTDSGDDCSSKTGED------------CTLEDVYT-------KCPKSCH 142
G V CE E G DCS + C +D YT +CP C
Sbjct: 447 GRCVQGRCECEHGFQGYDCSEMSCPHDCHQHGRCVNGMCVCDDGYTGEDCRELRCPGDCS 506
Query: 143 FCGDCADSR---------PDCDVLKERGDC 205
G C D R PDC L DC
Sbjct: 507 QRGRCVDGRCVCEHGFAGPDCADLACPSDC 536
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 122 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 241
+CP +CH G C D + C+ DC ++ C C
Sbjct: 189 ECPSNCHLRGQCVDGQCVCNEGFTGEDCSQL---ACPSDC 225
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 44 EDECT-DSGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 214
E+EC D G TGEDC CPK C G C + CD E DC ++
Sbjct: 296 ENECVCDEGF-----TGEDCG----ELICPKDCFDRGRCINGTCYCDEGFEGEDCGRL 344
Score = 28.5 bits (62), Expect = 4.9
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Frame = +2
Query: 38 MCEDECTDSGDDCSSKT--------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKE 193
+C +C D G C + T GEDC CP C G C + + CD
Sbjct: 314 ICPKDCFDRGR-CINGTCYCDEGFEGEDCGR----LACPHGCRGRGRCEEGQCVCDEGFA 368
Query: 194 RGDCDKMDDRVCRKTC---GHC 250
DC +R C C G C
Sbjct: 369 GADC---SERRCPSDCHNRGRC 387
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 53 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 214
C D +C GEDC +CP C G C + + CD + DC ++
Sbjct: 387 CLDGRCECDDGFEGEDCG----ELRCPGGCSGHGRCVNGQCVCDEGRTGEDCSQL 437
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 86 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTCGH 247
TG+DC +CP CH G C D + C DC + R C C +
Sbjct: 554 TGKDCGQR----RCPGDCHGQGRCVDGQCVCHEGFTGLDCGQ---RSCPNDCSN 600
>sp|Q05546|TENR_RAT Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural
recognition molecule J1-160/180)
Length = 1356
Score = 35.0 bits (79), Expect = 0.053
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Frame = +2
Query: 20 GLIVVAMCEDECTDSGDDCS--------SKTG----EDCTLEDVYT-------KCPKSCH 142
G+ V C + SGDDCS S G +C E+ YT +CP C
Sbjct: 212 GVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGDCS 271
Query: 143 FCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 250
G CA+ C DC + R C C GHC
Sbjct: 272 GKGQCANGTCLCQEGYAGEDCSQ---RRCLNACSGRGHC 307
>sp|Q8BYI9|TENR_MOUSE Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural
recognition molecule J1-160/180)
Length = 1358
Score = 35.0 bits (79), Expect = 0.053
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Frame = +2
Query: 20 GLIVVAMCEDECTDSGDDCS--------SKTG----EDCTLEDVYT-------KCPKSCH 142
G+ V C + SGDDCS S G +C E+ YT +CP C
Sbjct: 212 GVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGDCS 271
Query: 143 FCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 250
G CA+ C DC + R C C GHC
Sbjct: 272 GKGQCANGTCLCQEGYAGEDCSQ---RRCLNACSGRGHC 307
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 34.7 bits (78), Expect = 0.069
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Frame = +2
Query: 20 GLIVVAMCEDECTDSGDDCSSKTGEDCTLEDVYTK-----CPKSCHFCG--------DCA 160
G + C D D DC+ T + YT CPK+C FCG C
Sbjct: 60 GATTASTCAD---DPNTDCTQYTSLCSNAK--YTPLLQQFCPKTCGFCGGGSTAAPVQCV 114
Query: 161 DSRPDCDVLKERGDCDKM------DDRVCRKTCGHC 250
DS +C ++ G C + C KTC C
Sbjct: 115 DSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 34.7 bits (78), Expect = 0.069
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Frame = +2
Query: 122 KCPKSCHFC------GDCADSRPDCDVLKERGDC--DKMDDRVCRKTCGHC 250
+C SC C G CAD DC RG+C +K CR++C C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 30.8 bits (68), Expect = 1.00
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Frame = +2
Query: 44 EDECTDSGDDCSSKTGE-DCTLEDVYTK--CPKSCHFCG-------DCADSRPDCDVLKE 193
+ C + + C + + +C VY C SC C +C+D +C +
Sbjct: 459 QTSCFNENECCGPWSAKGECQKNPVYMNVWCKASCRQCTPNYNINEECSDRHTNCAMWSR 518
Query: 194 RGDCDKMD---DRVCRKTCGHC 250
G+C+K CR +C C
Sbjct: 519 SGECNKNPLWMSENCRSSCQKC 540
>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225)
Length = 1808
Score = 34.3 bits (77), Expect = 0.090
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 86 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 250
TGEDC CP +CH G C D+ CD DC ++ +C C G C
Sbjct: 276 TGEDCN----EPLCPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDCFDRGRC 326
Score = 33.5 bits (75), Expect = 0.15
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Frame = +2
Query: 41 CEDECTDSGDDCSSK-------TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 199
C ++C G + + TGEDC +CP CH G C + R CD
Sbjct: 471 CPNDCNSHGRCVNGQCVCDEGYTGEDCG----ELRCPNDCHNRGRCVEGRCVCDNGFMGE 526
Query: 200 DCDKMDDRVCRKTC---GHC 250
DC ++ C C G C
Sbjct: 527 DCGELS---CPNDCHQHGRC 543
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Frame = +2
Query: 65 GDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGDC 205
GDDCS K +CPK C+ G C D R DC L+ DC
Sbjct: 370 GDDCSQK------------RCPKDCNNRGHCVDGRCVCHEGYLGEDCGELRCPNDC 413
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Frame = +2
Query: 41 CEDECTDSGDDCSSKT-------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 199
C ++C + G + GEDC CP CH G C D R C
Sbjct: 502 CPNDCHNRGRCVEGRCVCDNGFMGEDCG----ELSCPNDCHQHGRCVDGRCVCHEGFTGE 557
Query: 200 DCDKMDDRVCRKTCGH 247
DC +R C C +
Sbjct: 558 DC---RERSCPNDCNN 570
Score = 28.1 bits (61), Expect = 6.5
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Frame = +2
Query: 35 AMCEDECTDSGDDCSSK-------TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKE 193
A C +C D G TG DC E CP C G C R C
Sbjct: 221 AACPSDCNDQGKCVDGVCVCFEGYTGPDCGEE----LCPHGCGIHGRCVGGRCVCHEGFT 276
Query: 194 RGDCDKMDDRVCRKTC---GHC 250
DC ++ +C C G C
Sbjct: 277 GEDC---NEPLCPNNCHNRGRC 295
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Frame = +2
Query: 41 CEDECTDSGDDCSSKT-------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 199
C +C + G + GEDC +CP CH G C + + CD
Sbjct: 378 CPKDCNNRGHCVDGRCVCHEGYLGEDCG----ELRCPNDCHNRGRCINGQCVCDEGFIGE 433
Query: 200 DCDKM 214
DC ++
Sbjct: 434 DCGEL 438
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 53 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCD 181
C D C TGEDC CP C+ G C + R C+
Sbjct: 543 CVDGRCVCHEGFTGEDCRERS----CPNDCNNVGRCVEGRCVCE 582
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 33.5 bits (75), Expect = 0.15
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 62 SGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 241
+G DCS K +CP CH G C D R +CD DC ++ C C
Sbjct: 368 AGLDCSEK------------RCPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGC 412
Query: 242 -GH 247
GH
Sbjct: 413 SGH 415
Score = 33.5 bits (75), Expect = 0.15
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 86 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 250
TGEDC+ +CP CH G C + + C+ + DC M C C G C
Sbjct: 430 TGEDCS----QLRCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMS---CPNDCHQHGRC 480
Score = 31.2 bits (69), Expect = 0.76
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Frame = +2
Query: 38 MCEDECTDSGDDCSSK-------TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKER 196
+C ++C D G + TGEDC CP +CH G C + + CD
Sbjct: 314 ICPNDCFDRGRCINGTCYCEEGFTGEDCGKPT----CPHACHTQGRCEEGQCVCDEGFAG 369
Query: 197 GDCDKMDDRVCRKTC---GHC 250
DC ++ C C G C
Sbjct: 370 LDC---SEKRCPADCHNRGRC 387
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Frame = +2
Query: 41 CEDECTDSGDDCSSKT-------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 199
C ++C G K G DC+ CP CH G C + CD
Sbjct: 439 CPNDCHSRGRCVEGKCVCEQGFKGYDCS----DMSCPNDCHQHGRCVNGMCVCDDGYTGE 494
Query: 200 DCDKMDDRVCRKTCGH 247
DC DR C + C +
Sbjct: 495 DC---RDRQCPRDCSN 507
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 53 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 214
C D +C TG DC KCP C G C + + CD DC ++
Sbjct: 387 CVDGRCECDDGFTGADCG----ELKCPNGCSGHGRCVNGQCVCDEGYTGEDCSQL 437
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 122 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 241
+CP +CH G C D + CD DC ++ C C
Sbjct: 189 ECPGNCHLRGRCIDGQCICDDGFTGEDCSQL---ACPSDC 225
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Frame = +2
Query: 86 TGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGDC 205
TGEDC +CP+ C G C D + PDC L DC
Sbjct: 492 TGEDCRDR----QCPRDCSNRGLCVDGQCVCEDGFTGPDCAELSCPNDC 536
>sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrachion-like protein)
Length = 4289
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = +2
Query: 86 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTCG 244
TGEDC + CP+ C G C D R CD DC R C CG
Sbjct: 302 TGEDCGVRS----CPRGCSQRGRCKDGRCVCDPGYTGEDC---GTRSCPWDCG 347
Score = 31.6 bits (70), Expect = 0.58
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 53 CTDSGDDC-SSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDC 205
C D C TGEDC+ CP+ C G C D CD DC
Sbjct: 352 CVDGRCVCWPGYTGEDCSTRT----CPRDCRGRGRCEDGECICDTGYSGDDC 399
Score = 30.8 bits (68), Expect = 1.00
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Frame = +2
Query: 20 GLIVVAMCEDECTDSGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSR---------P 172
GL +C + SG+DCS+++ CP C G C D R
Sbjct: 536 GLCEDGVCVCDAGYSGEDCSTRS------------CPGGCRGRGQCLDGRCVCEDGYSGE 583
Query: 173 DCDVLKERGDCDK---MDDRVC 229
DC V + DC + D VC
Sbjct: 584 DCGVRQCPNDCSQHGVCQDGVC 605
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = +2
Query: 32 VAMCEDECTDSG----DDCSSKTG---EDCTLEDVYTKCPKSCHFCGDCADSRPDCD 181
V C ++C+ G C G EDC++ CP +CH G C + R CD
Sbjct: 587 VRQCPNDCSQHGVCQDGVCICWEGYVSEDCSIRT----CPSNCHGRGRCEEGRCLCD 639
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Frame = +2
Query: 20 GLIVVAMCEDECTDSGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 199
G V +C SG DCS ++ CP+ C G C R CD
Sbjct: 226 GRCVQGVCVCRAGFSGPDCSQRS------------CPRGCSQRGRCEGGRCVCDPGYTGD 273
Query: 200 DCDKMDDRVCRKTC---GHC 250
DC R C + C G C
Sbjct: 274 DCGM---RSCPRGCSQRGRC 290
Score = 28.5 bits (62), Expect = 4.9
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Frame = +2
Query: 41 CED-ECTD----SGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDC 205
CED EC SGDDC ++ CP C+ G C D R C DC
Sbjct: 383 CEDGECICDTGYSGDDCGVRS------------CPGDCNQRGRCEDGRCVCWPGYTGTDC 430
Query: 206 DKMDDRVCRKTC---GHC 250
R C + C G C
Sbjct: 431 ---GSRACPRDCRGRGRC 445
Score = 28.1 bits (61), Expect = 6.5
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +2
Query: 53 CTDSGDDCS-SKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVC 229
C D C TGEDC CP C G C D R C DC R C
Sbjct: 321 CKDGRCVCDPGYTGEDCGTRS----CPWDCGEGGRCVDGRCVCWPGYTGEDC---STRTC 373
Query: 230 RKTC---GHC 250
+ C G C
Sbjct: 374 PRDCRGRGRC 383
Score = 28.1 bits (61), Expect = 6.5
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Frame = +2
Query: 53 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVC 229
C D C+ TGEDC +CP C G C D CD DC R C
Sbjct: 507 CVDGRCVCNPGFTGEDCGSR----RCPGDCRGHGLCEDGVCVCDAGYSGEDC---STRSC 559
Query: 230 RKTC---GHC 250
C G C
Sbjct: 560 PGGCRGRGQC 569
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,604,689
Number of Sequences: 369166
Number of extensions: 659740
Number of successful extensions: 2526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 68,354,980
effective HSP length: 67
effective length of database: 55,977,735
effective search space used: 1679332050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)