Planarian EST Database


Dr_sW_016_H17

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_016_H17
         (867 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34855|NU5M_APILI  NADH-ubiquinone oxidoreductase chain 5...   181   2e-45
sp|P07706|NU5M_DROYA  NADH-ubiquinone oxidoreductase chain 5...   165   1e-40
sp|P18932|NU5M_DROME  NADH-ubiquinone oxidoreductase chain 5...   164   3e-40
sp|P34854|NU5M_ANOGA  NADH-ubiquinone oxidoreductase chain 5...   164   4e-40
sp|P51899|NU5M_ANOAR  NADH-ubiquinone oxidoreductase chain 5...   164   4e-40
sp|P33510|NU5M_ANOQU  NADH-ubiquinone oxidoreductase chain 5...   163   5e-40
sp|Q36428|NU5M_LOCMI  NADH-ubiquinone oxidoreductase chain 5...   163   5e-40
sp|Q9ZYM7|NU5M_RHISA  NADH-ubiquinone oxidoreductase chain 5...   160   4e-39
sp|Q00232|NU5M_MYTED  NADH-ubiquinone oxidoreductase chain 5...   157   3e-38
sp|P48918|NU5M_ALBCO  NADH-ubiquinone oxidoreductase chain 5...   155   1e-37
>sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 554

 Score =  181 bits (460), Expect = 2e-45
 Identities = 107/276 (38%), Positives = 156/276 (56%), Gaps = 7/276 (2%)
 Frame = +1

Query: 58  FDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTF--ISYYFFLEVNLFRFIYLLN 231
           +++  FNS+ F N++L  D Y  L F+ L S++F +     ISY    E+ + RF+YL+ 
Sbjct: 36  WNIYTFNSMKF-NFLLLID-YKSLMFIFLVSMIFSMIIIYSISYMDLSELKMDRFLYLMI 93

Query: 232 TFILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDA--L 405
            F++SM +LI+SPN++S+++GWDGLG IS+ LV  +         + T L+NR GD   L
Sbjct: 94  LFLISMYMLILSPNMLSIILGWDGLGLISYCLVIYYMKMKSFTSGMVTILLNRLGDIGLL 153

Query: 406 FILGLVFIXXXXXXXXXXXXXXVLVLALM---TKRALYPFNSWLPEAMAAPTPVSALVHS 576
            I+GL+                +++  L+   TK A  PF++WLP AM APTPVS+LVHS
Sbjct: 154 LIMGLMTYYGSWNLSFYKMNEFMMIYILLMAFTKSAQIPFSTWLPMAMMAPTPVSSLVHS 213

Query: 577 STLVVSGLYVLFRYFDFLTVNILFFFTCIGLFTLYYRGFQALLAYDSKKLVAYSTLSQXX 756
           STLV +G+Y+L RY + L  N   +   I   T+ + G  A    D KK+VAYSTLSQ  
Sbjct: 214 STLVTAGIYLLIRYVNLLDFNYKNYIMLIASLTMLFAGLVANFELDLKKVVAYSTLSQLG 273

Query: 757 XXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGSYM 864
                              +HA+FK+ +F+ VGSYM
Sbjct: 274 FMMSMLSIGSTELVFLHLFIHAMFKSLMFMCVGSYM 309
>sp|P07706|NU5M_DROYA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 573

 Score =  165 bits (418), Expect = 1e-40
 Identities = 103/280 (36%), Positives = 147/280 (52%), Gaps = 13/280 (4%)
 Frame = +1

Query: 58  FDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTF 237
           ++++  NS++ +   L FD+ S LF   +  I   V  +   Y   + N+ RFI L+  F
Sbjct: 34  WEVVSLNSMSIVMTFL-FDWMSLLFMSFVLMIASLVIFYSKEYMESDENINRFIMLVLMF 92

Query: 238 ILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILG 417
           +LSM+LLI+SPNLVS+L+GWDGLG +S+ LV  F         + T L NR GD   +L 
Sbjct: 93  VLSMMLLIISPNLVSILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLA 152

Query: 418 LV------------FIXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVS 561
           +             ++              +++LA MTK A  PF+SWLP AMAAPTPVS
Sbjct: 153 IAWMLNYGSWNYIFYLEVMQNEFSMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVS 212

Query: 562 ALVHSSTLVVSGLYVLFRYFDFLTVNIL-FFFTCIGLFTLYYRGFQALLAYDSKKLVAYS 738
           ALVHSSTLV +G+Y+L R+   L+ + L      +   T++  G  A   +D KK++A S
Sbjct: 213 ALVHSSTLVTAGVYLLIRFNIVLSTSWLGQLLLLLSGLTMFMAGLGANFEFDLKKIIALS 272

Query: 739 TLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGS 858
           TLSQ                      HA+FKA LF+  G+
Sbjct: 273 TLSQLGLMMSILSMGFYKLAMFHLLTHALFKALLFMCAGA 312
>sp|P18932|NU5M_DROME NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 572

 Score =  164 bits (415), Expect = 3e-40
 Identities = 102/280 (36%), Positives = 147/280 (52%), Gaps = 13/280 (4%)
 Frame = +1

Query: 58  FDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTF 237
           ++L+  NS++ +   L FD+ S LF   +  I   V  +   Y   + ++ RFI L+  F
Sbjct: 34  WELVSLNSMSIVMTFL-FDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMF 92

Query: 238 ILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILG 417
           +LSM+LLI+SPNL+S+L+GWDGLG +S+ LV  F         + T L NR GD   +L 
Sbjct: 93  VLSMMLLIISPNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLS 152

Query: 418 LV------------FIXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVS 561
           +             ++              +++LA MTK A  PF+SWLP AMAAPTPVS
Sbjct: 153 IAWMLNYGSWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVS 212

Query: 562 ALVHSSTLVVSGLYVLFRYFDFLTVNIL-FFFTCIGLFTLYYRGFQALLAYDSKKLVAYS 738
           ALVHSSTLV +G+Y+L R+   L+ + L      +   T++  G  A   +D KK++A S
Sbjct: 213 ALVHSSTLVTAGVYLLIRFNIILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALS 272

Query: 739 TLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGS 858
           TLSQ                      HA+FKA LF+  G+
Sbjct: 273 TLSQLGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGA 312
>sp|P34854|NU5M_ANOGA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 580

 Score =  164 bits (414), Expect = 4e-40
 Identities = 101/281 (35%), Positives = 149/281 (53%), Gaps = 14/281 (4%)
 Frame = +1

Query: 58  FDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTF 237
           ++++   S++ +   L FD+ S +F   +  I   V  + + Y   + N+ RFI L+  F
Sbjct: 40  WEILSLQSMSIVMTFL-FDWMSLMFMSFVLLISSLVIFYSNQYMEEDYNINRFILLVLMF 98

Query: 238 ILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILG 417
           ++SM++LI+SPNL+S+L+GWDGLG +S+ LV  F         + T L NR GD   +L 
Sbjct: 99  VMSMMMLIISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVALLLA 158

Query: 418 LV------------FIXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVS 561
           +             ++              +++LA MTK A  PF+SWLP AMAAPTPVS
Sbjct: 159 IAWMLNYGSWNYIFYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVS 218

Query: 562 ALVHSSTLVVSGLYVLFRYFDFLTVN--ILFFFTCIGLFTLYYRGFQALLAYDSKKLVAY 735
           ALVHSSTLV +G+Y+L R+ D L +N  +  F   +   T++  G  A   +D KK++A 
Sbjct: 219 ALVHSSTLVTAGVYLLIRFNDVL-MNWWMAQFLLLVSGLTMFMAGLGANFEFDLKKIIAL 277

Query: 736 STLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGS 858
           STLSQ                      HA+FKA LF+  GS
Sbjct: 278 STLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGS 318
>sp|P51899|NU5M_ANOAR NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 384

 Score =  164 bits (414), Expect = 4e-40
 Identities = 101/281 (35%), Positives = 149/281 (53%), Gaps = 14/281 (4%)
 Frame = +1

Query: 58  FDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTF 237
           ++++   S++ +   L FD+ S +F   +  I   V  + + Y   + N+ RFI L+  F
Sbjct: 40  WEILSLQSMSIVMTFL-FDWMSLMFMSFVLLISSLVIFYSNQYMEEDYNINRFILLVLMF 98

Query: 238 ILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILG 417
           ++SM++LI+SPNL+S+L+GWDGLG +S+ LV  F         + T L NR GD   +L 
Sbjct: 99  VMSMMMLIISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVALLLA 158

Query: 418 LV------------FIXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVS 561
           +             ++              +++LA MTK A  PF+SWLP AMAAPTPVS
Sbjct: 159 IAWMLNYGSWNYIFYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVS 218

Query: 562 ALVHSSTLVVSGLYVLFRYFDFLTVN--ILFFFTCIGLFTLYYRGFQALLAYDSKKLVAY 735
           ALVHSSTLV +G+Y+L R+ D L +N  +  F   +   T++  G  A   +D KK++A 
Sbjct: 219 ALVHSSTLVTAGVYLLIRFNDVL-MNWWMAQFLLLVSGLTMFMAGLGANFEFDLKKIIAL 277

Query: 736 STLSQXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGS 858
           STLSQ                      HA+FKA LF+  GS
Sbjct: 278 STLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGS 318
>sp|P33510|NU5M_ANOQU NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 576

 Score =  163 bits (413), Expect = 5e-40
 Identities = 103/275 (37%), Positives = 144/275 (52%), Gaps = 13/275 (4%)
 Frame = +1

Query: 73  FNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTFILSMV 252
           F S++ +   L FD+ S +F   +  I   V  + + Y   + N+ RFI L+  F++SM+
Sbjct: 41  FKSMSIVMTFL-FDWMSLMFMSFVLLISSLVIFYSNQYMEEDYNINRFILLVLMFVMSMM 99

Query: 253 LLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILGLV--- 423
           +LI+SPNL+S+L+GWDGLG +S+ LV  F         + T L NR GD   +L +    
Sbjct: 100 MLIISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVALLLAIAWML 159

Query: 424 ---------FIXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVSALVHS 576
                    ++              +++LA MTK A  PF+SWLP AMAAPTPVSALVHS
Sbjct: 160 NYGSWNYIFYLEMMSKNTEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHS 219

Query: 577 STLVVSGLYVLFRYFDFLTVNIL-FFFTCIGLFTLYYRGFQALLAYDSKKLVAYSTLSQX 753
           STLV +GLY+L R+   LT   +  F   I   T++  G  A   +D KK++A STLSQ 
Sbjct: 220 STLVTAGLYLLIRFNILLTDWWMGQFMLLISGLTMFMAGLGANFEFDLKKIIALSTLSQL 279

Query: 754 XXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGS 858
                                HA+FKA LF+  GS
Sbjct: 280 GLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGS 314
>sp|Q36428|NU5M_LOCMI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 572

 Score =  163 bits (413), Expect = 5e-40
 Identities = 102/275 (37%), Positives = 143/275 (52%), Gaps = 15/275 (5%)
 Frame = +1

Query: 79  SLNFLNYILYF--DFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTFILSMV 252
           SLN    ++ F  D+ S +F   +  I   V  + + Y   E N+ RFI ++  FILSM 
Sbjct: 38  SLNSSMVVMTFIIDWMSLVFMSFVMYISSLVIYYSNDYMHNEKNINRFIMIVLMFILSMA 97

Query: 253 LLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILGLVFIX 432
            LI+SPNL+S+L+GWDGLG +S+ LV  +         + T L NR GD   ++ + ++ 
Sbjct: 98  FLIISPNLISILLGWDGLGLVSYCLVIYYQNVKSYNAGMLTALSNRIGDVAILISISWML 157

Query: 433 XXXXXXXXXXXXXV------------LVLALMTKRALYPFNSWLPEAMAAPTPVSALVHS 576
                        +            ++LA MTK A  PF+SWLP AMAAPTPVSALVHS
Sbjct: 158 NFGSWNYIYYYYFISDSFEMKIITLLIILAAMTKSAQIPFSSWLPAAMAAPTPVSALVHS 217

Query: 577 STLVVSGLYVLFRYFDFLTV-NILFFFTCIGLFTLYYRGFQALLAYDSKKLVAYSTLSQX 753
           STLV +G+Y+L R+   L V +  ++   IG  T++  G  A   +D KK++A STLSQ 
Sbjct: 218 STLVTAGVYLLIRFNPMLMVYDFGWYILFIGCLTMFMSGLGANFEFDLKKIIALSTLSQL 277

Query: 754 XXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVGS 858
                                HA+FKA LF+  GS
Sbjct: 278 GLMMSILSMGYSDLAFFHLLTHALFKALLFMCAGS 312
>sp|Q9ZYM7|NU5M_RHISA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 552

 Score =  160 bits (405), Expect = 4e-39
 Identities = 99/274 (36%), Positives = 143/274 (52%), Gaps = 8/274 (2%)
 Frame = +1

Query: 58  FDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTF 237
           ++L+   S  +  YIL  D+ SC+F   +  I   V  +   Y   + N   F +++  F
Sbjct: 34  YNLMSILSFEYKFYIL-LDWMSCMFSFTVLMISSMVLWYSHSYMSSDKNKTSFCWMVLMF 92

Query: 238 ILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILG 417
           ILSM+LL++ PN+  L++GWDGLG  S+ LV  +         + T + NR GD + I+ 
Sbjct: 93  ILSMLLLVLMPNVFMLILGWDGLGLTSYCLVIFYQSSNSYNSGMMTIISNRVGDVMVIMM 152

Query: 418 LVF------IXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVSALVHSS 579
           ++F                     ++++A +TK A  PF++WLP AMAAPTPVSALVHSS
Sbjct: 153 IIFAINFNSFELTSIKSFELIWGLLIIIAGLTKSAQIPFSAWLPAAMAAPTPVSALVHSS 212

Query: 580 TLVVSGLYVLFRYFDFLTVNILF--FFTCIGLFTLYYRGFQALLAYDSKKLVAYSTLSQX 753
           TLV +G+Y+L R FD L  N +F  F   I L T+   G  A    D KK++A+STLSQ 
Sbjct: 213 TLVTAGVYLLIR-FDLLFNNNIFSAFLMKISLMTMIMSGMNAFFENDLKKIIAFSTLSQL 271

Query: 754 XXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVG 855
                               VHA+FK+ LF+  G
Sbjct: 272 SIMMLTLSLSLTNLSFFHLIVHAIFKSMLFLCAG 305
>sp|Q00232|NU5M_MYTED NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 568

 Score =  157 bits (398), Expect = 3e-38
 Identities = 102/270 (37%), Positives = 139/270 (51%), Gaps = 10/270 (3%)
 Frame = +1

Query: 76  NSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLNTFILSMVL 255
           N L+F ++    D  S +F   +  I   V T+  +Y   E+   RF+ L+  F+LSMV 
Sbjct: 40  NCLSF-SFSFLLDNVSMIFVGTVLVISGSVATYCKWYMAEELYYNRFMGLVWLFVLSMVF 98

Query: 256 LIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFILGLV---- 423
           +I+ PNL+ LL+GWDGLG  SFLLV  +         + T L NR GD L ++ +     
Sbjct: 99  MILVPNLLMLLIGWDGLGLTSFLLVAYYQNNKSLSAAMLTALTNRIGDVLVLISISIFLS 158

Query: 424 ----FIXXXXXXXXXXXXXXVLVLALMTKRALYPFNSWLPEAMAAPTPVSALVHSSTLVV 591
                I              ++V A MTK A  PF +WLP AMAAPTPVS+LVHSSTLV 
Sbjct: 159 EGGWLIYSYHPVQMWLNLGFMVVFAGMTKSAQMPFCAWLPAAMAAPTPVSSLVHSSTLVT 218

Query: 592 SGLYVLFRYFDFLTVN--ILFFFTCIGLFTLYYRGFQALLAYDSKKLVAYSTLSQXXXXX 765
           +G+Y++ R F  ++ N  +      + LFTL   G  A+ A+D KK++A STLSQ     
Sbjct: 219 AGVYLVLRSFYIISSNPYVTQVLMILSLFTLVLAGSSAVFAFDLKKVIALSTLSQLSLMM 278

Query: 766 XXXXXXXXXXXXXXXXVHAVFKASLFVSVG 855
                            HAVFKA LF+  G
Sbjct: 279 FSISILLPSVAFFHLVTHAVFKALLFLGAG 308
>sp|P48918|NU5M_ALBCO NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 545

 Score =  155 bits (392), Expect = 1e-37
 Identities = 101/276 (36%), Positives = 135/276 (48%), Gaps = 8/276 (2%)
 Frame = +1

Query: 52  LFFDLIRFNSLNFLNYILYFDFYSCLFFMILFSIVFCVYTFISYYFFLEVNLFRFIYLLN 231
           L F+L    S+NF N  L  D  S  F +++  I  CV+ F + Y   +    RF ++L 
Sbjct: 26  LMFNLFSTQSVNF-NLALICDKVSTSFLVVVLLISSCVFLFANEYMSEDHYNIRFGWILI 84

Query: 232 TFILSMVLLIVSPNLVSLLVGWDGLGFISFLLVC*FGXXXXXXXXLKTFLVNRFGDALFI 411
           +F+ SM +LI+S ++ +LL+GWDGLG  SF L+  +           T + NR GD L I
Sbjct: 85  SFVASMGILILSGSIFTLLLGWDGLGLTSFALIAYYDNYNASSSAFLTLMTNRLGDVLII 144

Query: 412 LGLVFIXXXXXXXXXXXXXXV------LVLALMTKRALYPFNSWLPEAMAAPTPVSALVH 573
                I              V        +A  TK A YPF++WLP AMAAPTPVSALVH
Sbjct: 145 ATFSVILVTGLTVHFPPYTLVWLSSILFTIASFTKSAQYPFSAWLPAAMAAPTPVSALVH 204

Query: 574 SSTLVVSGLYVLFRYF--DFLTVNILFFFTCIGLFTLYYRGFQALLAYDSKKLVAYSTLS 747
           SSTLV +G+Y++ R F  D     +      +G  T    G  AL  YD KK++A STLS
Sbjct: 205 SSTLVTAGIYLMIRCFMVDGAPAEMYSLMGLVGSITCLLGGSVALFEYDLKKVIALSTLS 264

Query: 748 QXXXXXXXXXXXXXXXXXXXXXVHAVFKASLFVSVG 855
           Q                      HA+FKA LF+  G
Sbjct: 265 QLGVMMYSLSLNLPYLALLHLYGHAMFKAMLFLGAG 300
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,624,521
Number of Sequences: 369166
Number of extensions: 1032885
Number of successful extensions: 5399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5006
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)