Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H06
(895 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q871L5|ATG2_NEUCR Autophagy-related protein 2 32 2.4
sp|P20980|MCES_VACCC mRNA capping enzyme, small subunit (mR... 32 3.1
sp|P33808|MCES_VARV mRNA capping enzyme small subunit (mRNA... 32 3.1
sp|Q9Z1W6|LYRIC_RAT LYRIC protein (Lysine-rich CEACAM1 co-i... 31 4.1
sp|P04318|MCES_VACCV mRNA capping enzyme small subunit (mRN... 31 5.3
sp|O57215|MCES_VACCA mRNA capping enzyme, small subunit (mR... 31 5.3
sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha (PAP) (Polyn... 30 9.1
>sp|Q871L5|ATG2_NEUCR Autophagy-related protein 2
Length = 2011
Score = 32.0 bits (71), Expect = 2.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 888 KSVLLVKTKKIKLSPNIENSLRKHHSMHTRTNTRSDLIQSNPIRSDR 748
K VL T K +PN+ + H S H+ T +S L+ ++ DR
Sbjct: 550 KQVLAPVTNLAKSNPNLPGAFSVHQSFHSSTTDQSTLLTPENLKEDR 596
>sp|P20980|MCES_VACCC mRNA capping enzyme, small subunit (mRNA
(guanine-N(7)-)-methyltransferase)
Length = 287
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/63 (23%), Positives = 37/63 (58%)
Frame = +1
Query: 391 TENSAFKPIQSPILNEQSESLDTKSVHSFRKFTNKSHKSRHRARSFITDSRITVSSPQLE 570
T++S++K + S + ++ +DT+ ++ F +F+N+ +++ + S + S +T S +E
Sbjct: 217 TKSSSWKDVNSVQFSILNDPVDTEFINKFLEFSNRVYEALYYVHSLLYSS-MTSDSKSIE 275
Query: 571 QSH 579
H
Sbjct: 276 NKH 278
>sp|P33808|MCES_VARV mRNA capping enzyme small subunit (mRNA
(guanine-N(7)-)-methyltransferase)
Length = 287
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/63 (23%), Positives = 37/63 (58%)
Frame = +1
Query: 391 TENSAFKPIQSPILNEQSESLDTKSVHSFRKFTNKSHKSRHRARSFITDSRITVSSPQLE 570
T++S++K + S + ++ +DT+ ++ F +F+N+ +++ + S + S +T S +E
Sbjct: 217 TKSSSWKDVNSVQFSILNDPVDTEFINKFLEFSNRVYEALYYVHSLLYSS-MTSDSKSIE 275
Query: 571 QSH 579
H
Sbjct: 276 NKH 278
>sp|Q9Z1W6|LYRIC_RAT LYRIC protein (Lysine-rich CEACAM1 co-isolated protein) (Metastasis
adhesion protein) (Metadherin)
Length = 581
Score = 31.2 bits (69), Expect = 4.1
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = +1
Query: 376 GGTIKTENSAFKPIQSPILNEQSESLDTKSVHSFRKFTNKSHKSRHRARSFITDSRITVS 555
G + + ++ Q PI N+Q +S D K T KS K + + + D+ IT
Sbjct: 401 GNWVDEDRASLLKSQEPISNDQKDSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSITQD 460
Query: 556 SPQLEQ-SHNSLRCHVIETETVQRARSCLFLLSTS 657
+ LE+ + L + + Q L +STS
Sbjct: 461 TEDLEKDTREELPVNTSKARPKQEKACSLKTMSTS 495
>sp|P04318|MCES_VACCV mRNA capping enzyme small subunit (mRNA
(guanine-N(7)-)-methyltransferase)
Length = 287
Score = 30.8 bits (68), Expect = 5.3
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 391 TENSAFKPIQSPILNEQSESLDTKSVHSFRKFTNKSHKSRHRARSFITDSRITVSSPQLE 570
T++S++K + S + + +DT+ ++ F +F+N+ +++ + S + S +T S +E
Sbjct: 217 TKSSSWKDVNSVQFSILNNPVDTEFINKFLEFSNRVYEALYYVHSLLYSS-MTSDSKSIE 275
Query: 571 QSH 579
H
Sbjct: 276 NKH 278
>sp|O57215|MCES_VACCA mRNA capping enzyme, small subunit (mRNA
(guanine-N(7)-)-methyltransferase)
Length = 287
Score = 30.8 bits (68), Expect = 5.3
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 391 TENSAFKPIQSPILNEQSESLDTKSVHSFRKFTNKSHKSRHRARSFITDSRITVSSPQLE 570
T++S++K + S + + +DT+ ++ F +F+N+ +++ + S + S +T S +E
Sbjct: 217 TKSSSWKDVNSVQFSILNNPVDTEFINKFLEFSNRVYEALYYVHSLLYSS-MTSDSKSIE 275
Query: 571 QSH 579
H
Sbjct: 276 NKH 278
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha (PAP) (Polynucleotide adenylyltransferase
alpha)
Length = 739
Score = 30.0 bits (66), Expect = 9.1
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 436 EQSESLDTKSVHSFRKFTNKSHKSRHRARSFITDSRITVSSPQLEQSHNSLRCHVIE 606
E SE+L + + FT+ ++ ++ F D +I + +Q H L HV++
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQ 503
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,771,590
Number of Sequences: 369166
Number of extensions: 1889648
Number of successful extensions: 4238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4237
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)