Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H03
(297 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14140|SEM1_SCHPO Putative 26 proteasome complex subunit... 39 0.003
sp|P60897|DSS1_MOUSE 26 proteasome complex subunit DSS1 (De... 38 0.008
sp|Q9VM46|SEM1_DROME Probable 26 proteasome complex subunit... 36 0.024
sp|Q9PQ93|RNH3_UREPA Ribonuclease HIII (RNase HIII) 33 0.15
sp|Q95Y72|SEM1_CAEEL Putative 26 proteasome complex subunit... 33 0.26
sp|P87118|IPYR2_SCHPO Putative inorganic pyrophosphatase C3... 32 0.34
sp|Q7SA04|SEM1_NEUCR Putative 26 proteasome complex subunit... 32 0.58
sp|Q7VQP8|PSD_BLOFL Phosphatidylserine decarboxylase proenz... 29 3.8
sp|Q72XC7|Y5451_BACC1 Hypothetical UPF0059 membrane protein... 29 3.8
sp|Q9AE24|RPRY_BACFR Transcriptional regulatory protein rprY 28 6.4
>sp|O14140|SEM1_SCHPO Putative 26 proteasome complex subunit sem1
Length = 71
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 90 EKDSSDREVWLENWDNEDI-EDVFVVNLRNHLKEKGYVQN 206
E D+ D +W NWD+EDI +D F V L+ LK+KG N
Sbjct: 32 ELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKKKGVAAN 71
>sp|P60897|DSS1_MOUSE 26 proteasome complex subunit DSS1 (Deleted in split hand/split
foot protein 1) (Split hand/foot deleted protein 1
homolog)
sp|P60896|DSS1_HUMAN 26 proteasome complex subunit DSS1 (Deleted in split hand/split
foot protein 1) (Split hand/foot deleted protein 1)
Length = 70
Score = 37.7 bits (86), Expect = 0.008
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 78 WDAHEKDSSDREVWLENWDNEDIEDVFVVNLRNHLKEKGY 197
W ++D D VW +NWD++++ED F LR L++ GY
Sbjct: 27 WAGLDEDE-DAHVWEDNWDDDNVEDDFSNQLRAELEKHGY 65
>sp|Q9VM46|SEM1_DROME Probable 26 proteasome complex subunit sem1
Length = 79
Score = 36.2 bits (82), Expect = 0.024
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 96 DSSDREVWLENWDNEDIEDVFVVNLRNHLKEK 191
D + VW +NWD++++ED F L+ HL+ K
Sbjct: 44 DEEELNVWEDNWDDDNVEDDFSQQLKAHLESK 75
>sp|Q9PQ93|RNH3_UREPA Ribonuclease HIII (RNase HIII)
Length = 316
Score = 33.5 bits (75), Expect = 0.15
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Frame = -1
Query: 285 IVYYSDKI*LALIRKYKNTYLLKTIIHF-----------VHILFLLNDFSN*LRKHLQYL 139
IV Y+ K LI++Y N ++LKTI+H+ + +F + D + L+ QYL
Sbjct: 164 IVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWNQYL 223
Query: 138 RCPNFQ 121
+ NFQ
Sbjct: 224 QKVNFQ 229
>sp|Q95Y72|SEM1_CAEEL Putative 26 proteasome complex subunit sem1
Length = 82
Score = 32.7 bits (73), Expect = 0.26
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 90 EKDSSDREVWLENWDNEDIEDVFVVNLRNHLKEKGY 197
E + D VW +NWD+E E F L+ L++ G+
Sbjct: 44 EGEEDDVNVWEDNWDDETHESEFSKQLKEELRKSGH 79
>sp|P87118|IPYR2_SCHPO Putative inorganic pyrophosphatase C3A12.02 (Pyrophosphate
phosphohydrolase) (PPase)
Length = 286
Score = 32.3 bits (72), Expect = 0.34
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 87 HEKDSSDREVWLENWDNEDIEDVFVVNLRNHLKEK 191
H K S DR+ +++N+ NE + +V ++N N LKE+
Sbjct: 232 HWKVSRDRKQYIKNFHNESVNNVDLINKINSLKEE 266
>sp|Q7SA04|SEM1_NEUCR Putative 26 proteasome complex subunit sem1
Length = 91
Score = 31.6 bits (70), Expect = 0.58
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +3
Query: 78 WDAHEKDSSD-----REVWLENWDNEDIEDVFVVNLRNHLKE 188
W+A + +++ + +W E+WD++D D F L+ LK+
Sbjct: 43 WEAEDTEAAKGNNEAKHLWEESWDDDDTSDDFSAQLKEELKK 84
>sp|Q7VQP8|PSD_BLOFL Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 298
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 153 HLQYLRCPNFQAKLLYLT-NLFRVHPNIQIETPQIHFLHEKIL 28
H Y+ C +LLY+ +LF VHP I P + +EK++
Sbjct: 144 HWVYMPCTGTLRELLYIPGDLFSVHPKIIKNIPDVLSRNEKLI 186
>sp|Q72XC7|Y5451_BACC1 Hypothetical UPF0059 membrane protein BCE5451
Length = 182
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 37 FMKKMNLRSFNLNVGMHTKKIRQIEKFGLKIGTTKILKMF 156
F M+ S +L +GM T KIRQI G+ IG I+ F
Sbjct: 14 FALGMDAFSVSLGMGMMTLKIRQILYIGVTIGIFHIIMPF 53
>sp|Q9AE24|RPRY_BACFR Transcriptional regulatory protein rprY
Length = 236
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 EKDSSDREVWLE-NWDNEDIEDVFVVNLRNHLKEKGYVQ 203
++D + + +W++ N+ N DV++ LR HLK+ ++
Sbjct: 180 QRDFALKTIWIDDNYFNARSMDVYITKLRKHLKDDDSIE 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,630,390
Number of Sequences: 369166
Number of extensions: 504165
Number of successful extensions: 1335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)