Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_G21
(184 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZKQ6|Y944_HELPJ Hypothetical UPF0076 protein JHP0879 56 3e-08
sp|P52758|UK14_HUMAN Ribonuclease UK114 (14.5 kDa translati... 55 5e-08
sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 ... 55 6e-08
sp|P80601|UK14_CAPHI Ribonuclease UK114 (14.5 kDa translati... 55 6e-08
sp|O25598|Y944_HELPY Hypothetical UPF0076 protein HP0944 54 1e-07
sp|P52759|UK14_RAT Ribonuclease UK114 (14.5 kDa translation... 52 4e-07
sp|P52760|UK14_MOUSE Ribonuclease UK114 (Heat-responsive pr... 51 7e-07
sp|P55654|Y4SK_RHISN Hypothetical UPF0076 protein y4sK 47 2e-05
sp|O34133|ALDR_LACLA Putative regulator aldR 42 6e-04
sp|P39330|YJGF_ECOLI UPF0076 protein yjgF 41 7e-04
>sp|Q9ZKQ6|Y944_HELPJ Hypothetical UPF0076 protein JHP0879
Length = 125
Score = 55.8 bits (133), Expect = 3e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAV 113
+NGIY ++FK+P+PARA +QVA+LP A VEIEAIA+
Sbjct: 88 VNGIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAI 124
>sp|P52758|UK14_HUMAN Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(p14.5) (UK114 antigen homolog)
Length = 137
Score = 55.1 bits (131), Expect = 5e-08
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDLT 128
+N IY +FK FPARAAYQVA LP +++EIEA+A+ G LT
Sbjct: 92 VNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLT 133
>sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 in chromosome III
Length = 171
Score = 54.7 bits (130), Expect = 6e-08
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDL 125
+N +Y +FK P+PARAAYQVA LP VEIEA+A+ G++
Sbjct: 126 VNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 166
>sp|P80601|UK14_CAPHI Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(UK114 antigen) (14.3 kDa perchloric acid soluble
protein)
Length = 137
Score = 54.7 bits (130), Expect = 6e-08
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDLT 128
+N +Y +F+ FPARAAYQVA LP +VEIEAIAV G LT
Sbjct: 92 VNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIAVQGPLT 133
>sp|O25598|Y944_HELPY Hypothetical UPF0076 protein HP0944
Length = 125
Score = 53.5 bits (127), Expect = 1e-07
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAV 113
+NGIY ++F +P+PARA +QVA+LP A VEIEAIA+
Sbjct: 88 VNGIYGSYFTEPYPARATFQVAKLPKDALVEIEAIAI 124
>sp|P52759|UK14_RAT Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(Perchloric acid soluble protein)
Length = 137
Score = 52.0 bits (123), Expect = 4e-07
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDLT 128
+N IY T+F+ PARAAYQVA LP +++EIEAIAV G T
Sbjct: 92 VNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQGPFT 133
>sp|P52760|UK14_MOUSE Ribonuclease UK114 (Heat-responsive protein 12)
Length = 135
Score = 51.2 bits (121), Expect = 7e-07
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVG 119
+N IY T+F+ PARAAYQVA LP ++VEIEAIAV G
Sbjct: 92 VNEIYKTYFQGSLPARAAYQVAALPRGSRVEIEAIAVQG 130
>sp|P55654|Y4SK_RHISN Hypothetical UPF0076 protein y4sK
Length = 126
Score = 46.6 bits (109), Expect = 2e-05
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +3
Query: 3 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAI 107
+N +Y+ FF P+PARA Y+V LP AKVEIEA+
Sbjct: 88 INRVYTGFFSTPYPARACYEVKALPKGAKVEIEAV 122
>sp|O34133|ALDR_LACLA Putative regulator aldR
Length = 126
Score = 41.6 bits (96), Expect = 6e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +3
Query: 6 NGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVV 116
N IYS FF + FPAR+A VA LP + +EIE IA V
Sbjct: 88 NAIYSKFFDKEFPARSAVGVAGLPKNVLIEIEVIAEV 124
>sp|P39330|YJGF_ECOLI UPF0076 protein yjgF
Length = 128
Score = 41.2 bits (95), Expect = 7e-04
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +3
Query: 3 MNGIYSTFFKQ---PFPARAAYQVARLPLSAKVEIEAIAV 113
+N Y FF + FPAR+ +VARLP K+EIEAIAV
Sbjct: 87 VNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAV 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,901,161
Number of Sequences: 369166
Number of extensions: 250428
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)