Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_G11
(564 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P82979|HCC1_HUMAN Nuclear protein Hcc-1 (Proliferation a... 67 2e-11
sp|Q9D1J3|HCC1_MOUSE Nuclear protein Hcc-1 65 1e-10
sp|O74871|YCW3_SCHPO Hypothetical protein C31H12.03c in chr... 43 5e-04
sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhes... 38 0.020
sp|Q5R5X0|PININ_PONPY Pinin 38 0.020
sp|P79149|PININ_CANFA Pinin 38 0.020
sp|P14629|ERCC5_XENLA DNA-repair protein complementing XP-G... 37 0.034
sp|Q5U7N4|SEMG2_PANTR Semenogelin-2 precursor (Semenogelin ... 37 0.044
sp|Q8R9R3|PYRR_THETN PyrR bifunctional protein [Includes: P... 37 0.044
sp|Q5U7M9|SEMG2_MACNE Semenogelin-2 precursor (Semenogelin ... 36 0.075
>sp|P82979|HCC1_HUMAN Nuclear protein Hcc-1 (Proliferation associated cytokine-inducible
protein CIP29)
Length = 210
Score = 67.4 bits (163), Expect = 2e-11
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 9/167 (5%)
Frame = +3
Query: 27 KNETNDSLNLDDHSNHVET---QMEPVADEPCSKIPKLDVEPQEIEAVASIEKNDETKKL 197
+ E N+ L D + ET ++ +EP K + E + ++ + I + + +K
Sbjct: 47 EEEANEEDVLGDETEEEETKPIELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQK- 105
Query: 198 ERAARFGIKTSNMDEEKKLARAQRFGLDVSKANGDVS-----IDIEKLKNREKRFGVSVS 362
RA RF + S E KK ARA RFG+ G S ++++KLK R +RFG++VS
Sbjct: 106 -RAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVS 162
Query: 363 DKLILAADEEKKQKRAERFG-MQKAVDTESTNTISSDDRSLSEQQGL 500
+ D+EK +KR ERFG + + T +T + R +E+ G+
Sbjct: 163 SISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGI 209
>sp|Q9D1J3|HCC1_MOUSE Nuclear protein Hcc-1
Length = 210
Score = 65.1 bits (157), Expect = 1e-10
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 23/186 (12%)
Frame = +3
Query: 12 ETKEDKNETNDSLN--LDDHSNHVETQMEPVADEPCSKIPK------LDVEPQEIEAVAS 167
ETK K + + L L+DH+ + + + DE + PK + EP E +
Sbjct: 26 ETKGIKQDLINRLQAYLEDHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKAVDMA 85
Query: 168 IEKN--------DETKKLE-RAARFGIKTSNMDEEKKLARAQRFGLDVSKANGDVS---- 308
EK +T++++ RA RF + S E KK ARA RFG+ G S
Sbjct: 86 SEKKVVKITSGIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKP 143
Query: 309 -IDIEKLKNREKRFGVSVSDKLILAADEEKKQKRAERFG-MQKAVDTESTNTISSDDRSL 482
++++KLK R +RFG++VS + D+EK +KR ERFG + + T +T + R
Sbjct: 144 MVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKR 203
Query: 483 SEQQGL 500
+E+ G+
Sbjct: 204 AERFGI 209
>sp|O74871|YCW3_SCHPO Hypothetical protein C31H12.03c in chromosome III
Length = 245
Score = 43.1 bits (100), Expect = 5e-04
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Frame = +3
Query: 3 STSETKEDKNETNDSLNLDDHSN-HVETQMEPVADEPCSKIPKLDVEPQEIE-----AVA 164
+ +E+ ++ N++ +L D + + + ++ S EP+ E A
Sbjct: 36 AATESNDENTSNNNATDLGDLAPPEDDIDWGDMENDTISTDVNKPAEPESKETSAPAAAV 95
Query: 165 SIEKNDETKKLERAARFGIKTSNMDEEKKLARAQRFGLDVSKANGDVSIDIEKLKNREKR 344
IEK +E+ + ++ ++ +E ++ + + ++ DV+ + EKL R KR
Sbjct: 96 EIEKENESIISKETSQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQRAKR 155
Query: 345 FGVSVSDKLILAADEEKKQKRAERFGMQK 431
FG+ V D+ I KK RA RFG+Q+
Sbjct: 156 FGIPVDDEQI------KKAARAARFGIQQ 178
Score = 39.7 bits (91), Expect = 0.005
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Frame = +3
Query: 15 TKEDKNETNDSLNLDDHSNHVETQMEPVADEPCSKIPKLDVEPQEIEAVASIEKNDETKK 194
+KE S ++H E + V++E S + K E K
Sbjct: 106 SKETSQAPETSTGAEEHQETTEESKQSVSNEVSSP---------------DVAKEQE-KL 149
Query: 195 LERAARFGIKTSNMDEEKKLARAQRFGLDVSKA--------------NGDVSIDIEKLKN 332
++RA RFGI + ++ KK ARA RFG+ A N S ++ KN
Sbjct: 150 IQRAKRFGIPVDD-EQIKKAARAARFGIQQPLASSNNKNHNQSKNPQNRSNSRSKQRNKN 208
Query: 333 REKRFGVSVSDKLIL--AADEEKKQKRAERFGM 425
+ S IL + EK +KRAERFG+
Sbjct: 209 APPKSAPSKRKSNILDDPIEAEKARKRAERFGV 241
>sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhesion-related phosphoprotein)
(Domain-rich serine protein) (DRS-protein) (DRSP)
(Melanoma metastasis clone A protein)
(Desmosome-associated protein) (SR-like protein)
(Nuclear protein SDK3)
Length = 717
Score = 37.7 bits (86), Expect = 0.020
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Frame = +3
Query: 132 DVEPQEIEAVASIEKNDETKKLERAARFGIKTSNMDEEKKLARAQRFGL---DVSKANGD 302
D E +++ A T K ER R I+ NMDE+ K + FGL + K +
Sbjct: 101 DPEDDDVKKPALQSSVVATSK-ERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQE 159
Query: 303 VSIDIEKLKNREKRFGVSVSDKLILAADEEKKQ---KRAERFGMQKAVDTE 446
++ E+ K R++ + KL + A+EE+KQ +R E F ++A TE
Sbjct: 160 STVATERQKRRQE-----IEQKLEVQAEEERKQVENERRELFEERRAKQTE 205
>sp|Q5R5X0|PININ_PONPY Pinin
Length = 719
Score = 37.7 bits (86), Expect = 0.020
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Frame = +3
Query: 132 DVEPQEIEAVASIEKNDETKKLERAARFGIKTSNMDEEKKLARAQRFGL---DVSKANGD 302
D E +++ A T K ER R I+ NMDE+ K + FGL + K +
Sbjct: 101 DPEDDDVKKPALQSSVVATSK-ERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQE 159
Query: 303 VSIDIEKLKNREKRFGVSVSDKLILAADEEKKQ---KRAERFGMQKAVDTE 446
++ E+ K R++ + KL + A+EE+KQ +R E F ++A TE
Sbjct: 160 STVATERQKRRQE-----IEQKLEVQAEEERKQVENERRELFEERRAKQTE 205
>sp|P79149|PININ_CANFA Pinin
Length = 773
Score = 37.7 bits (86), Expect = 0.020
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Frame = +3
Query: 132 DVEPQEIEAVASIEKNDETKKLERAARFGIKTSNMDEEKKLARAQRFGL---DVSKANGD 302
D E +++ A T K ER R I+ NMDE+ K + FGL + K +
Sbjct: 101 DPEDDDVKKPALQSSVVATSK-ERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQE 159
Query: 303 VSIDIEKLKNREKRFGVSVSDKLILAADEEKKQ---KRAERFGMQKAVDTE 446
++ E+ K R++ + KL + A+EE+KQ +R E F ++A TE
Sbjct: 160 STVATERQKRRQE-----IEQKLEVQAEEERKQVENERRELFEERRAKQTE 205
>sp|P14629|ERCC5_XENLA DNA-repair protein complementing XP-G cells homolog (Xeroderma
pigmentosum group G complementing protein homolog)
Length = 1196
Score = 37.0 bits (84), Expect = 0.034
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 111 CSKIPKLDVEPQEIEAVASIEKNDETKKLERAARFGIKTSNMDEEKKLARAQRFGL-DVS 287
C K + DVE +E+EA ++ + + T + R G KT+ + K + D
Sbjct: 1051 CMKRKERDVEAEEVEAAVAVMERECTNQ-----RKGQKTNTKSQGTKRRKPTECSQEDQD 1105
Query: 288 KANGDVSIDIEKLKNREKRFGVSVSDKLILAADEEKKQKRAERFGMQKAVD-TESTNTIS 464
G + I+++ L ++ S SD L + KQ ++ G QKA + ES+++
Sbjct: 1106 PGGGFIGIELKTLSSKAYSSDGSSSDAEDLPSGLIDKQSQSGIVGRQKASNKVESSSSSD 1165
Query: 465 SDDRSL 482
+DR++
Sbjct: 1166 DEDRTV 1171
>sp|Q5U7N4|SEMG2_PANTR Semenogelin-2 precursor (Semenogelin II) (SGII)
Length = 407
Score = 36.6 bits (83), Expect = 0.044
Identities = 40/196 (20%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Frame = +3
Query: 6 TSETKEDKNETNDSLNL-DDHSNHVETQMEPVADEPCSKIPKLDVEPQEIEAVASIEKND 182
T + ++K + +++ ++HS ++T + P + PK D+ + E + +
Sbjct: 210 TKNSHQNKGHYQNVVDVREEHSGKLQTSLHPAHQDRLQHGPK-DIFTTQDELLVYNKNQH 268
Query: 183 ETKKLERAARFGIKT------SNMDEEKKLARAQR-FGLDVSKANGDVSIDIEK------ 323
+TK L + G K S+ EE++L ++ DVSK G +SI E+
Sbjct: 269 QTKNLNQDQEHGQKAHKISYQSSRTEERQLNHGEKSVQKDVSK--GSISIQTEEKIHGKS 326
Query: 324 -----LKNREKRFGVSVSDKLILAADEEKKQKRAERFGMQKAVDTESTNTISSDDRSLSE 488
+ ++++ G + ++ E++ G+QK V ++ + +I ++++ +
Sbjct: 327 QNQVTIHSQDQEHGHKENKMSYQSSSTEERHLNCGEKGIQKGV-SKGSISIQTEEQIHGK 385
Query: 489 QQGLV*IPMMKKESSR 536
Q V IP +E R
Sbjct: 386 SQNXVRIPSQAQEYGR 401
>sp|Q8R9R3|PYRR_THETN PyrR bifunctional protein [Includes: Pyrimidine operon regulatory
protein; Uracil phosphoribosyltransferase (UPRTase)]
Length = 178
Score = 36.6 bits (83), Expect = 0.044
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Frame = +3
Query: 180 DETKKLERAARFGIKTSNMDEEKKLAR-AQRF--------GLDVSKANGDVSIDIEKLKN 332
+ K +E GIKT + K++AR R LD++ D++ D+E+
Sbjct: 26 ERNKGIEDVVLVGIKTRGVPLAKRIARYISRIEGKEPPVGSLDITLYRDDLTTDLEQPVV 85
Query: 333 REKRFGVSVSDKLILAADEEKKQKRAERFGMQKAVD 440
++K GV V++K+++ D+ R R M +D
Sbjct: 86 KKKDIGVDVANKIVVLVDDVIYTGRTVRAAMDAIID 121
>sp|Q5U7M9|SEMG2_MACNE Semenogelin-2 precursor (Semenogelin II) (SGII)
Length = 582
Score = 35.8 bits (81), Expect = 0.075
Identities = 40/193 (20%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Frame = +3
Query: 6 TSETKEDKNETNDSLNL-DDHSNHVETQMEPVADEPCSKIPKLDVEPQEIEAVASIEKND 182
T + ++K + +++ ++HS ++T + P + PK D+ + E + +
Sbjct: 210 TKNSHQNKGHYQNVVDVREEHSGKLQTSLHPAHQDRLQHGPK-DIFTTQDELLVYNKNQH 268
Query: 183 ETKKLERAARFGIKT------SNMDEEKKLARAQR-FGLDVSKANGDVSIDIEK------ 323
+TK L + G K S+ EE++L ++ DVSK G +SI E+
Sbjct: 269 QTKNLNQDQEHGQKAHKISYQSSRTEERQLNHGEKSVQKDVSK--GSISIQTEEKIHGKS 326
Query: 324 -----LKNREKRFGVSVSDKLILAADEEKKQKRAERFGMQKAVDTESTNTISSDDRSLSE 488
+ ++++ G + ++ E+++ + G+QK V S +I ++++ +
Sbjct: 327 QNQVTIPSQDQEHGHKENKISYQSSSAEERRLNSGEKGIQKGVXKGSI-SIQTEEKIYGK 385
Query: 489 QQGLV*IPMMKKE 527
Q V IP +E
Sbjct: 386 SQNQVTIPSQDQE 398
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,107,885
Number of Sequences: 369166
Number of extensions: 853891
Number of successful extensions: 3485
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3453
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)