Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_G10
(705 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 ... 248 1e-65
sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubar... 247 2e-65
sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 ... 246 6e-65
sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 ... 238 1e-62
sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 ... 237 2e-62
sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kD... 237 2e-62
sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 ... 236 3e-62
sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 ... 236 4e-62
sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 pr... 235 7e-62
sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Lam... 222 9e-58
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 317
Score = 248 bits (633), Expect = 1e-65
Identities = 121/192 (63%), Positives = 144/192 (75%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QYV+ R G I + K +EK+ LAARAIAA+EN D+CVIS+RP QR VLKF
Sbjct: 31 DFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
YTGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP DHQ V E+S+VNIPVIA NT
Sbjct: 91 AHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIPVIALTNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS +KYVDI IPCNNK S+GLMW++LAREV R++G ISR + W+V VDLF R EE
Sbjct: 151 DSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPWEVMVDLFFYRDPEEA 210
Query: 544 DKQQDDENLPQE 579
+K+ E E
Sbjct: 211 EKEAQAEQAAAE 222
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
receptor homolog) (K14)
Length = 270
Score = 247 bits (630), Expect = 2e-65
Identities = 120/184 (65%), Positives = 143/184 (77%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
NFQM+QYV+ R G I L K +EKLQLAARAI A++N D+ VISSRP QR VLKF
Sbjct: 31 NFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
+YT PIAGRFTPG FTNQIQ AFREPRLL+V+DP DHQ ++E+S+VNIPVIAF NT
Sbjct: 91 AKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++Y+DI IPCNNK SIGLMW+LLAREV R++G ISRS+EW V VDLF R EE
Sbjct: 151 DSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPEEA 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 316
Score = 246 bits (627), Expect = 6e-65
Identities = 122/226 (53%), Positives = 157/226 (69%), Gaps = 8/226 (3%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
++QM QYV+ R G +I L + +EKL +AAR I A+EN DVCVISSRP QR VLKF
Sbjct: 31 DYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVISSRPYGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
G +TGA PIAGR+TPGTFTNQIQ AFREPR+LIV+DP +DHQ V E+S+VNIPVIA CNT
Sbjct: 91 GAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++YVDI IPCNNK SIGLMW++L+REV R++G ISR + W++ DL+ R EE
Sbjct: 151 DSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMCDLYFFRDPEEA 210
Query: 544 DKQQDD--------ENLPQEINAINIGGEEAGFGPIGQPSQQLDDW 657
+K++ + + P + A + P GQP ++ DW
Sbjct: 211 EKEEQEARDRATAVKEEPAQPYA-EQWSDPVAVPPAGQPVAEVTDW 255
>sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (37LRP)
Length = 296
Score = 238 bits (607), Expect = 1e-62
Identities = 116/184 (63%), Positives = 141/184 (76%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VLKF
Sbjct: 31 DFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VNIP IA CNT
Sbjct: 91 AAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R EE
Sbjct: 151 DSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEI 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon
carcinoma laminin-binding protein) (NEM/1CHD4)
(Multidrug resistance-associated protein MGr1-Ag)
Length = 295
Score = 237 bits (605), Expect = 2e-62
Identities = 115/184 (62%), Positives = 141/184 (76%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VLKF
Sbjct: 31 DFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA CNT
Sbjct: 91 AAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R EE
Sbjct: 151 DSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEI 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 237 bits (605), Expect = 2e-62
Identities = 115/184 (62%), Positives = 141/184 (76%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VLKF
Sbjct: 31 DFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA CNT
Sbjct: 91 AAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R EE
Sbjct: 151 DSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEI 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 236 bits (603), Expect = 3e-62
Identities = 115/184 (62%), Positives = 141/184 (76%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VLKF
Sbjct: 31 DFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA CNT
Sbjct: 91 AAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R EE
Sbjct: 151 DSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYRDPEEI 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 236 bits (602), Expect = 4e-62
Identities = 115/184 (62%), Positives = 140/184 (76%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VLKF
Sbjct: 31 DFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA CNT
Sbjct: 91 AAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS + YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R EE
Sbjct: 151 DSPLAYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEI 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 protein)
Length = 295
Score = 235 bits (600), Expect = 7e-62
Identities = 114/184 (61%), Positives = 140/184 (76%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
+FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VLKF
Sbjct: 31 DFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKF 90
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
TGA PIAGRFTPG FTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA CNT
Sbjct: 91 AAATGATPIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 150
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R EE
Sbjct: 151 DSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEI 210
Query: 544 DKQQ 555
+K++
Sbjct: 211 EKEE 214
>sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Laminin receptor homolog)
Length = 298
Score = 222 bits (565), Expect = 9e-58
Identities = 109/191 (57%), Positives = 141/191 (73%)
Frame = +1
Query: 4 NFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVLKF 183
N+QM++YVF R G +IF L K +EKLQ+AAR I A+EN +D+ V S+RP QR VLKF
Sbjct: 35 NYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKF 94
Query: 184 GRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFCNT 363
+YTGAN IAGR TPGTFTNQ+Q +F EPRLLI++DP DHQ + E + NIP+IAFC+T
Sbjct: 95 AQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDT 154
Query: 364 DSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVEEE 543
DS +++VDI IP NNKG+ SIG +++LLAR V +M+G I+ +WDV VDLF R EE
Sbjct: 155 DSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEET 214
Query: 544 DKQQDDENLPQ 576
+ +DE PQ
Sbjct: 215 KPEDEDEAGPQ 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,820,978
Number of Sequences: 369166
Number of extensions: 1343593
Number of successful extensions: 4141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4125
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)