Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_G05
(661 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z255|UBE2A_MOUSE Ubiquitin-conjugating enzyme E2 A (Ub... 250 2e-66
sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 (Ubi... 249 4e-66
sp|P63146|UBE2B_HUMAN Ubiquitin-conjugating enzyme E2 B (Ub... 249 6e-66
sp|P25153|UBCD6_DROME Ubiquitin-conjugating enzyme E2-17 kD... 247 2e-65
sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa... 231 1e-60
sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 230 2e-60
sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 230 3e-60
sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2-17 kDa... 229 6e-60
sp|P23566|UBC2_SCHPO Ubiquitin-conjugating enzyme E2-17 kDa... 217 2e-56
sp|O74201|UBC2_CANAL Ubiquitin-conjugating enzyme E2-20 kDa... 214 2e-55
>sp|Q9Z255|UBE2A_MOUSE Ubiquitin-conjugating enzyme E2 A (Ubiquitin-protein ligase A)
(Ubiquitin carrier protein A) (HR6A) (mHR6A)
sp|P49459|UBE2A_HUMAN Ubiquitin-conjugating enzyme E2 A (Ubiquitin-protein ligase A)
(Ubiquitin carrier protein A) (HR6A) (hHR6A)
Length = 152
Score = 250 bits (639), Expect = 2e-66
Identities = 118/149 (79%), Positives = 130/149 (87%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A+RRL+RD KRLQ+DPPAGV GAP ++NIM WNAVIFGP+GTPFEDGTF L +EF+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
EEYPNKPP V F SKMFHPNVYADGSICLDIL N WSPTYDV +ILTSIQSLLDEPNPNS
Sbjct: 61 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PANS AAQLY EN+REYEKRV VE+SW
Sbjct: 121 PANSQAAQLYQENKREYEKRVSAIVEQSW 149
>sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 (Ubiquitin-protein ligase 1)
(Ubiquitin carrier protein 1)
Length = 192
Score = 249 bits (636), Expect = 4e-66
Identities = 117/150 (78%), Positives = 131/150 (87%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + ++RRL+RD K+LQ+DPPAGV GAP +DNI+ W A+IFGP TPFEDGTF L LEF+
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
EEYPNKPP V F SKMFHPNVYADGSICLDIL N WSPTYDV AILTSIQSLLDEPNPNS
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESWL 484
PANS+AAQLY ENRREYEKRV++ VE+SWL
Sbjct: 121 PANSLAAQLYQENRREYEKRVQQIVEQSWL 150
>sp|P63146|UBE2B_HUMAN Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (hHR6B) (E2-17 kDa)
sp|P63148|UBE2B_RABIT Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (E2(14k))
sp|P63147|UBE2B_MOUSE Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (E214K)
sp|P63149|UBE2B_RAT Ubiquitin-conjugating enzyme E2 B (Ubiquitin-protein ligase B)
(Ubiquitin carrier protein B) (HR6B) (E2(14k))
Length = 152
Score = 249 bits (635), Expect = 6e-66
Identities = 118/149 (79%), Positives = 129/149 (86%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A+RRL+RD KRLQ+DPP GV GAP ++NIM WNAVIFGP+GTPFEDGTF L +EFS
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
EEYPNKPP V F SKMFHPNVYADGSICLDIL N WSPTYDV +ILTSIQSLLDEPNPNS
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PANS AAQLY EN+REYEKRV VE+SW
Sbjct: 121 PANSQAAQLYQENKREYEKRVSAIVEQSW 149
>sp|P25153|UBCD6_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 151
Score = 247 bits (630), Expect = 2e-65
Identities = 116/151 (76%), Positives = 129/151 (85%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A+RRL+RD KRLQ+DPP GV GAP D+NIM WNAVIFGP TPFEDGTF L +EF+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
EEYPNKPP V F SK+FHPNVYADG ICLDIL N WSPTYDV AILTSIQSLL +PNPNS
Sbjct: 61 EEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESWLE 487
PANS AAQLY ENRREYEKRVK CVE+S+++
Sbjct: 121 PANSTAAQLYKENRREYEKRVKACVEQSFID 151
>sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 152
Score = 231 bits (590), Expect = 1e-60
Identities = 106/149 (71%), Positives = 127/149 (85%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A++RL+RD KRLQ DPPAG+ GAP D+NIM WNAVIFGPD TP++ GTF L L+FS
Sbjct: 1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
E+YPNKPP V F S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PANS AA++++EN+REY +RV+E VE+SW
Sbjct: 121 PANSEAARMFSENKREYNRRVREVVEQSW 149
>sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 1 (Ubiquitin-protein ligase
1) (Ubiquitin carrier protein 1)
Length = 152
Score = 230 bits (587), Expect = 2e-60
Identities = 105/149 (70%), Positives = 127/149 (85%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A++RL+RD KRLQ DPPAG+ GAP D+NIM WNAVIFGPD TP++ GTF L L+FS
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
E+YPNKPP V F S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PANS AA++Y+E++REY +RV++ VE+SW
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSW 149
>sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 2 (Ubiquitin-protein ligase
2) (Ubiquitin carrier protein 2)
Length = 152
Score = 230 bits (586), Expect = 3e-60
Identities = 105/149 (70%), Positives = 127/149 (85%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A++RL+RD KRLQ DPPAG+ GAP D+NIM WNAVIFGPD TP++ GTF L L+FS
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
E+YPNKPP V F S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PANS AA++++E++REY +RV+E VE+SW
Sbjct: 121 PANSEAARMFSESKREYNRRVREVVEQSW 149
>sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 152
Score = 229 bits (583), Expect = 6e-60
Identities = 104/149 (69%), Positives = 126/149 (84%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A++RL+RD KRLQ DPPAG+ GAP D+NI WNAVIFGPD TP++ GTF L L+F+
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFT 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
E+YPNKPP V F S+MFHPN+YADGSICLDIL N WSP YDV AILTSIQSLL +PNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PANS AA++Y+EN+REY ++V+E VE+SW
Sbjct: 121 PANSEAARMYSENKREYNRKVREVVEQSW 149
>sp|P23566|UBC2_SCHPO Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein) (RAD6 homolog)
Length = 151
Score = 217 bits (553), Expect = 2e-56
Identities = 100/149 (67%), Positives = 120/149 (80%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A+RRL+RD KR+Q DPPAGV +P+ DN+M WNAVI GP TPFEDGTF L L F
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFD 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
E+YPNKPP V F S MFHPNVYA+G +CLDIL N WSPTYDV AILTSIQSLL++PN S
Sbjct: 61 EQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNAS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESW 481
PAN+ AAQL+ EN++EY +RV++ VE+SW
Sbjct: 121 PANAEAAQLHRENKKEYVRRVRKTVEDSW 149
>sp|O74201|UBC2_CANAL Ubiquitin-conjugating enzyme E2-20 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 179
Score = 214 bits (545), Expect = 2e-55
Identities = 99/154 (64%), Positives = 120/154 (77%)
Frame = +2
Query: 35 MGSAAQRRLIRDLKRLQDDPPAGVCGAPIDDNIMYWNAVIFGPDGTPFEDGTFNLRLEFS 214
M + A+RRL+RD KR+Q DPP+GV +P+ DN+M WNAVI GP TPFEDGTF L L F
Sbjct: 1 MSTPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFD 60
Query: 215 EEYPNKPPRVVFTSKMFHPNVYADGSICLDILGNTWSPTYDVIAILTSIQSLLDEPNPNS 394
E+YPNKPP+V F S+MFHPNVYA G +CLDIL N WSPTYDV +ILTS+QSLL++PN +S
Sbjct: 61 EQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISS 120
Query: 395 PANSVAAQLYTENRREYEKRVKECVEESWLEKDD 496
PAN AA LY ++R Y KRV+E VE SW + DD
Sbjct: 121 PANVEAANLYKDHRSLYVKRVRETVENSWNDDDD 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,775,639
Number of Sequences: 369166
Number of extensions: 1736248
Number of successful extensions: 4864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4801
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)