Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_G01
(887 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosph... 39 0.019
sp|Q8BQC3|PUNC_MOUSE Putative neuronal cell adhesion molecu... 36 0.16
sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosph... 35 0.37
sp|P25942|TNR5_HUMAN Tumor necrosis factor receptor superfa... 34 0.62
sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplast precurs... 34 0.62
sp|Q90584|COHA1_CHICK Collagen alpha 1(XVII) chain (Bullous... 33 0.81
sp|Q8IVU1|PUNC_HUMAN Putative neuronal cell adhesion molecu... 33 0.81
sp|P08170|LOX1_SOYBN Seed lipoxygenase-1 (L-1) 32 1.8
sp|P20241|NRG_DROME Neuroglian precursor 32 1.8
sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule ... 32 2.4
>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta precursor
(Protein-tyrosine phosphatase delta) (R-PTP-delta)
Length = 1894
Score = 38.9 bits (89), Expect = 0.019
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 15 YKELMGISC--YNVTDLHPYTGYDYKIEAFNEVGSTTAEGHSMTLQTTSNTPPDVITNVP 188
YKE+ GI+ Y+V L PY+ Y++++ A N +G A +T QT+ TP +V
Sbjct: 362 YKEIDGIATTRYSVAGLSPYSDYEFRVVAVNNIGRGPASEPVLT-QTSEQTPSSAPRDVQ 420
Query: 189 PR 194
R
Sbjct: 421 AR 422
>sp|Q8BQC3|PUNC_MOUSE Putative neuronal cell adhesion molecule precursor
Length = 813
Score = 35.8 bits (81), Expect = 0.16
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 33 ISCYNVTDLHPYTGYDYKIEAFNEVGSTTAEGHSMTL----QTTSNTPP-DVITNVPPRD 197
+S YN++ L P T Y+ K+ A+N+ G A ++L + T+ TPP D
Sbjct: 588 VSSYNLSQLDPSTVYEVKLLAYNQHGDGNATVRFVSLKGASERTALTPPCDCRKEDVTNH 647
Query: 198 TLIFYIIVPILVTVSFVIIAVLIIV 272
T I++ I + V+ +I VL ++
Sbjct: 648 TSTTGIVIGIHIGVTCIIFCVLFLL 672
>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta precursor
(Protein-tyrosine phosphatase delta) (R-PTP-delta)
Length = 1912
Score = 34.7 bits (78), Expect = 0.37
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 15 YKELMGISC--YNVTDLHPYTGYDYKIEAFNEVGSTTAEGHSMTLQTTSNTPPDVITNVP 188
YKE+ G++ Y+V L PY+ Y++++ A N +G +T QT+ P +V
Sbjct: 367 YKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNIGRGPPSEPVLT-QTSEQAPSSAPRDVQ 425
Query: 189 PR 194
R
Sbjct: 426 AR 427
>sp|P25942|TNR5_HUMAN Tumor necrosis factor receptor superfamily member 5 precursor
(CD40L receptor) (B-cell surface antigen CD40) (CDw40)
(Bp50)
Length = 277
Score = 33.9 bits (76), Expect = 0.62
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 114 TTAEGHSMTLQTTSNTPPDVITNVPPRDTLIFYIIVPILVTVSFVIIAVLIIVMRCSRK 290
T+ E + +Q DV+ P+D L +++PI+ + F I+ VL+ + + ++K
Sbjct: 165 TSCETKDLVVQQAGTNKTDVVCG--PQDRLRALVVIPIIFGILFAILLVLVFIKKVAKK 221
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplast precursor (LOX2:Hv:3)
Length = 896
Score = 33.9 bits (76), Expect = 0.62
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 402 TPPGNHVYDKGKAENPKATTNDDED--EMLVPYATYESLSKPDSNTNRERPNRSTYLTGS 575
TPPG K + E + + + E + Y TY L PD N + +RP + G+
Sbjct: 208 TPPGIEALRKKELETLRGDGHSERKFHERVYDYDTYNDLGDPDKNIDHKRP-----VLGT 262
Query: 576 QAHSYQYPDMLQADTAPGPKPLYENESK 659
+ H Y + PK LY+ E++
Sbjct: 263 KEHPYP-----RRCRTGRPKTLYDPETE 285
>sp|Q90584|COHA1_CHICK Collagen alpha 1(XVII) chain (Bullous pemphigoid antigen 2) (180
kDa bullous pemphigoid antigen 2)
Length = 1146
Score = 33.5 bits (75), Expect = 0.81
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Frame = +3
Query: 534 NRERPNRSTYLTGSQAHSYQYPDMLQADTAPGPKPL----YENESKQPLLISTMKHRQYD 701
N E+ N S +LT +Q + Y D+ + D G P +ENE L++ + +++ +
Sbjct: 86 NLEKINHS-FLTVNQGNPYLEKDVSKVDFLHGVAPSSTFPFENEESVWLMVKSRLNKEIE 144
Query: 702 KGYSLGSQNLATLRPQNVRSNAQAAIQKPRG----PAVMSVAPGPV 827
+GY G + ++ +Q P+G P V + PGPV
Sbjct: 145 RGYFRGERGEPGMK-------GDMGLQGPKGDRGLPGVPGI-PGPV 182
>sp|Q8IVU1|PUNC_HUMAN Putative neuronal cell adhesion molecule precursor
Length = 814
Score = 33.5 bits (75), Expect = 0.81
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +3
Query: 33 ISCYNVTDLHPYTGYDYKIEAFNEVGSTTAEGHSMTL-----QTTSNTPPDVITNVPPRD 197
+S YN++ L P Y+ K+ A+N+ G A ++L +T + P D
Sbjct: 576 VSSYNLSQLDPTAVYEVKLLAYNQHGDGNATVRFVSLRGASERTALSPPCDCRKEEAANQ 635
Query: 198 TLIFYIIVPILVTVSFVIIAVLIIV 272
T I++ I + V+ +I VL ++
Sbjct: 636 TSTTGIVIGIHIGVTCIIFCVLFLL 660
>sp|P08170|LOX1_SOYBN Seed lipoxygenase-1 (L-1)
Length = 839
Score = 32.3 bits (72), Expect = 1.8
Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Frame = +3
Query: 399 PTPPGNHVYDKGKAENPKATTNDDEDEMLVPYATYESLSKPDSNTNRERP---NRSTYLT 569
P P ++ ++ K+ T E + + Y Y L PD + RP ST+
Sbjct: 155 PAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPY 214
Query: 570 GSQAHSYQYPDMLQADT--------APGPKPLYENESKQPLLISTMKHRQ-----YDKGY 710
+ + + P + +T P + L +SK L I T Q ++ +
Sbjct: 215 PRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAF 274
Query: 711 SLGSQNLATLRPQNVRSNAQAAIQKPRGPAVMSVAPGPVDSEAYR 845
L S + Q+V + I+ PR + ++ P PV E YR
Sbjct: 275 DLKSTPIEFHSFQDVHDLYEGGIKLPR-DVISTIIPLPVIKELYR 318
>sp|P20241|NRG_DROME Neuroglian precursor
Length = 1302
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 15 YKELMGISCYNVTDLHPYTGYDYKIEAFNEVGSTTAEGHSMTLQTTSNTP---PDVIT-- 179
Y+++ V + P+ Y +++ AFN++G++ HS + T + P PD +
Sbjct: 664 YEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQ 723
Query: 180 NVPPRDTLIFYIIVP 224
P + +I + +P
Sbjct: 724 GTEPNNLVISWTPMP 738
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule precursor (CHD2)
Length = 2012
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 42 YNVTDLHPYTGYDYKIEAFNEVGSTTAEGHSMTLQTTSNTPPDVITNVPPRDT-LIFYII 218
Y + DL T Y+ ++ N G + + TL +T P +I +V + L
Sbjct: 1533 YILYDLQEATWYELQMRVCNSAGCAEKQANFATLNYDGSTIPPLIKSVVQNEEGLTTNEG 1592
Query: 219 VPILVTVSFVIIAVLII 269
+ +LVT+S +++ VL++
Sbjct: 1593 LKMLVTISCILVGVLLL 1609
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,183,718
Number of Sequences: 369166
Number of extensions: 2171120
Number of successful extensions: 6024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6019
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)